| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 438,431 | A→T | 20.3% | I324N (ATC→AAC) | dxs ← | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 438,431 | 0 | A | T | 20.3% | 155.4 / 5.0 | 72 | I324N (ATC→AAC) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| Reads supporting (aligned to +/- strand): ref base A (40/14); new base T (2/13); total (45/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.20e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CACCTGATCATAGGCGCGTTGCAGGAAAGTGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTA > NC_007779/438193‑438658 | caCCTGATCATAGGCGCGTTGCAGGAAAGTGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGa > 1:883993/1‑239 (MQ=255) gATCATAGGCGCGTTGCAGGAAAGTGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGAttttt > 2:453763/1‑239 (MQ=255) cATAGGCGCGTTGCAGGAAAGTGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGaa < 2:592091/239‑1 (MQ=255) tAGGCGCGTTGCAGGAAAGTGGAGTAAATCGCGACTATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGCTTCGCACAACCAGTCGCCCACATTTTTTGCATa > 2:300290/1‑239 (MQ=255) tAGGCGCGTTGCAGGAAAGTGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATa > 1:1788161/1‑239 (MQ=255) tAGGCGCGTTGCAGGAAAGTGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACAAGTCGCCAACGATTTTTGAATa > 2:423976/1‑239 (MQ=255) gcgcGTTGCAGGAAAGAGGAGTAAATCACGACAATGGGTTTGTACCCACCAACCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCCCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCACCGCCGGCGTAAT‑CCCCCTCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCATTCGCCAAAGATTTTTGACTAGc > 2:692213/1‑238 (MQ=255) cgTTGCAGGAAAGTGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCg > 1:1708704/1‑238 (MQ=255) cgTTGCAGGAAAGTGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCg > 1:1525237/1‑238 (MQ=255) cgTTGCAGGAAAGTGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCg > 1:685814/1‑238 (MQ=255) cgTTGCAGGAAAGTGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCg > 1:147875/1‑238 (MQ=255) ttGCAGGAAAGTGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑a > 1:1249642/1‑239 (MQ=255) tGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGTTTTTTGAATAGCCCGGC‑AAAccgcacca > 2:1320486/1‑234 (MQ=255) tGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCt > 1:1086037/1‑238 (MQ=255) tGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCt > 1:41978/1‑238 (MQ=255) tGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCt > 1:1366715/1‑238 (MQ=255) gAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACt > 2:750646/1‑239 (MQ=255) aaTCGCGACAAAGGGTTTGTACCAACCAATCGCCAGACCCGCAGCAAAGGTAACC‑GAGTGTTGCGCGGCAAATGACACGTCGCAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGCGTAAT‑CGCCATCC‑GCTTGTTGTCTTTCGCTGCCGTATCGCACAACCAGTCGCCAAAGATTTTGACATAGCCGGGC‑ACACCGCCGTCACttt > 2:624032/1‑236 (MQ=255) cgcgACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCa > 1:920100/1‑239 (MQ=255) cgcgACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTAGGCa > 2:378574/1‑239 (MQ=255) cgACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGCCGAAGTAGAGATCCGGGTATTTACGTGAAAACTCGACAATGCCGGAACCTCCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTCCGCACAACACGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTCTTCGGCaa > 2:771157/1‑238 (MQ=255) tACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAggg > 1:1005322/1‑239 (MQ=255) caccaATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCa > 1:861577/1‑239 (MQ=255) caccaATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGGCGAAGTAGCGATCCGGGAATTTACGTGAAGACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGCAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCGGCCGTTTCGCACAACCAGTCGCTCAAGATGTTTGTATAGCTCTGC‑AGACCACGGCCACTTTTCGACAAACAACCGCTTGATGGAtga > 2:1682294/1‑237 (MQ=255) accaATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCaa > 1:1180999/1‑239 (MQ=255) tCGCCAGACCCGCAGCAACGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGCTTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTa > 2:515077/1‑239 (MQ=255) tCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGGTTTTTGAATAGATCGGC‑AAACCGCCGCTCCTTTTCCGCAAACAACCGCTGGCGGGATCAAATTTa > 2:1201558/1‑239 (MQ=255) tCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGCTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACCTTTCGGCAAACAACCGCTGGAGGGATCAAATTTa > 1:1206512/1‑239 (MQ=255) ccAGACCCGGAGCAAACTGCACCTGCTGTTTGCTCTACAATTCCCCTGTCGAGGGAGCGTCCCGGGAATTTTGGTGAAACCCACACCATCCCGCATCC‑CCACGCCCCCGCCGAGTTATCCGCCATCG‑GTTTTTTTTCTTCCGCGTCCTTTCCCCCCACCCGGTCACAAAAGTTTGTGAAATAGCGCGCA‑AACCCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAgg < 2:1061848/239‑1 (MQ=255) cagcaAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTgg > 2:718852/1‑239 (MQ=255) gtTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGGAAGGGAGCGGGGCtttt > 2:1816477/1‑239 (MQ=255) ggCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCCGGGCTTTTTCTTCCg > 2:445024/1‑239 (MQ=255) ggggAATTTCGGTGAAACCGCGACCAGGCCGAACCCTCCACGCTCCGCGGGAGAAAC‑CGCCATCT‑TTTTGTTGTTTTCCGCCCCCGTTCCGACCAACACGTCGCAAAAGTTTTTTGAATAGCGGGAA‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCa < 2:948443/238‑1 (MQ=255) taTTTACGGAAACACTCGACCAGGCCGGACCCTTCACGCATCGCCGCATTAAT‑CGCAATCT‑GCTTGTTGTTTTCGGTTGCCGTTCCGCACACACAGTCGCAAAAATTTTTTGAAGAGCTCGGC‑AATCCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGa < 2:41978/237‑1 (MQ=255) aaTTTACGTAAAAACTCGCCCATGCCGAACCTTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTTTCTTCCGCTGCCGTTTCGCACAACCAGTCGCAAAAGATTTTTAAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGa < 1:711065/238‑1 (MQ=255) tACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTTGAAAGGGCTCAGGGCTTTTTCTGCCGGTTCATAAACACGACCTTTTTTGGTCATGATATGc > 2:989659/1‑239 (MQ=255) gCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCa > 1:663984/1‑239 (MQ=255) ggACCCTTCACGCACCGCCGGAATATG‑CGCCATCA‑GTTTGTTGTTTTTCGCTCCCGTTTCCCACACCGGGTCGCCAAGGTTTTTTGAAAAGC‑CGGCAAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGt < 1:13763/239‑1 (MQ=255) aaCCTTCACGCATCGCCGGAATAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTc > 1:696622/1‑238 (MQ=255) ctccccGCACCGCGGGATAAAT‑CGCCATCA‑TTTTTTTTTCTGCCGCTCCCTTTCCCCACACCCAGTCCCCAAAGATTTTTGAAGAGCTCGAC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCgcgc < 1:572351/234‑1 (MQ=255) ctccACGCCTCGCGGGAGTAAC‑CGCCATCA‑GTTTGTTGTCTTTCGCTGCCGTTTCCCACACCCAGTCGCCAAATTTTTTTGAATACCGCGGC‑AACCCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCgcgc < 1:1034336/236‑1 (MQ=255) cTTCCCGCATCGCCGGAGTAAC‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCTTTTCCCACAACCAGTCGCCAAATATTTTTGAATAGCCCGGA‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCgcgc < 1:378574/239‑1 (MQ=255) tcccGCATCGCGGGAGTAAT‑CGCCATCA‑GTTTGTTTTTTTTCGCTGCCGTTTCCCACACCCAGTCGCAAAAGTTTTTTAAATAGCTCGGA‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCAt < 1:1200617/236‑1 (MQ=255) tcccGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTTTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCAt < 1:613492/236‑1 (MQ=255) tCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCAt > 1:578236/1‑239 (MQ=255) ccagccaccgcgGGAGTACT‑CCCCCGCA‑GTTTGTTGTGTTTCCGTCCCTTTCCGCACACCCGCGCCAAAAAGTTTTTGGAAGCGCCCGAA‑AACCCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCAt < 2:1057815/231‑1 (MQ=255) cGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTa > 1:1372138/1‑239 (MQ=255) ccGGAGTAAC‑CGCCATCA‑GTTTGTTTTCTTTCGCTGCCGTTTCCCACAACCAGCCGCAAAAGATTTTTGAATAGCCCGGA‑AACCCGCCGCTTCTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGc < 1:1071423/239‑1 (MQ=255) ggATTAAT‑CGCCATCA‑GCTTTTTGTCTTCCGCTGCCTTTTCGCACAACCAGCCGCCAAAGTTTTTTGAATAGCTCGAC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCgt < 1:1352376/239‑1 (MQ=255) gtgataactcccATCAGGCTTTTTTTCTTTCGCGCCCTTTCCACCCACCCAGCCCCCAAATATTTTTGAAGAGCCCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCg < 1:686644/229‑1 (MQ=255) aT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGAt > 2:1408018/1‑239 (MQ=255) aT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGGGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGACCTGCGGGCCTTTCAGGCCCGGCATGTTCTTTAGCGGGGTGaa > 2:1172526/1‑238 (MQ=255) t‑CGCCATCA‑GCTTTTTGTCTTCCGCTCCCGTTTCGCACACCCAGGCGCCAAAGTTTTTAAAATAGCCCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATa < 1:740164/239‑1 (MQ=255) t‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATa > 2:754377/1‑239 (MQ=255) tccccATCA‑GTTTTTTTTCTTCCGCTCCCGTTTCGCACACCCAGTCGCAAAAGATTTTTAAATAGCCCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATa < 1:1459262/236‑1 (MQ=255) aTCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGcc > 1:1691632/1‑238 (MQ=255) aTCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCCGTTGTTCTTTTGCgtgggtaataacc > 2:623255/1‑229 (MQ=255) attttgtttTCTTTCGCTTCCTTTCCGCACAACCAGCCGCCAAGTATTTTTGAATGGCCGGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAg < 1:445024/236‑1 (MQ=255) ttgtCTTCTGCCGCCGGTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGATCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACTGCTGGAGGAATCAAATTTAAGCAAGGCGTGGAAAGTGATCGGGTATTTTTCTGCCCGGTCATAAACCCAACCTTTATTGGGAATGATATGCCGGAACTGGGGGCCTTTCAGGTAGCGCAATTTCCTTAGCGTGGTGGTAAGCCCCAGCCCAtt > 2:1790353/1‑238 (MQ=255) ttCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCCCATCggtacc > 2:432073/1‑234 (MQ=255) ttCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCGGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGAcc > 2:474334/1‑239 (MQ=255) cTGCCTTTTCGCACAACCATTCGCCAACGCTTTTTGAATAGCTCGGC‑AACCCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCACATTTAGGCACGGCGTGGAAAGTTATCGGGTCTTTTTCTGCCGGTTCATCAACCCGACCTTTTTTGGTCATGATATGCCGGAACTCCGGGCCTTTCCTGCCCCGCCTGATCTTTAGCGTGGTGATAATCCCCCGCACATCCTGACCATc > 2:55319/1‑238 (MQ=255) ccggttccccacaACCAGTCGCAAAAATTTTTTGAAAAGTGCGCC‑AACCCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCAc < 1:85519/230‑1 (MQ=255) tccccacaCCCAGCCCCCAAAGATTTTTAAATACCCCGCA‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGc < 1:1320486/235‑1 (MQ=255) gCACAACCAGTCGACAAAGTTTTTTGAATAGCTCGAA‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCAt < 1:374179/186‑1 (MQ=255) gCACAACCAGTCCCCAAAGTTTTTTAAATAGCCCGGA‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGa < 1:1400757/239‑1 (MQ=255) cacaCCCAGTCGCAAAAGATTTTTGAATAGCGCGGA‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGAt < 1:750646/239‑1 (MQ=255) acacCCACTCGCAAAGGTTTTTGGAAGGGCGGGGA‑AAGCCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATg < 1:209782/239‑1 (MQ=255) acaGCCAGCCGCAAAAGATTTTTGAACAGCCCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATg < 1:771157/239‑1 (MQ=255) gaggccacaaaaGATTTTTGAAGAGCGCAGC‑AACCCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGt < 2:424589/230‑1 (MQ=255) tCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGAACTTTTTTGGTCATGATATGTAGGAACTGCGGGCCTTTCAGGTCTCGCATGTTCTTTAGc > 2:374179/1‑186 (MQ=255) cGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTa < 1:754377/236‑1 (MQ=255) cAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAg > 1:1662061/1‑193 (MQ=255) | CACCTGATCATAGGCGCGTTGCAGGAAAGTGGAGTAAATCGCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACC‑GCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAAT‑CGCCATCA‑GCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGC‑AAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTA > NC_007779/438193‑438658 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |