| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 949,176 | G→T | 18.9% | P272Q (CCA→CAA) | Y75_RS04685 ← | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 949,176 | 0 | G | T | 18.9% | 229.3 / 9.0 | 79 | P272Q (CCA→CAA) | Y75_RS04685 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (9/54); new base T (14/2); total (23/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.96e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTTTGACGGGGATCTTCCCGAAAATGGAAGCCTTCACTGCAGAGTGGACCTTCCAGTTGGCGCTGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGAAAAA > NC_007779/948939‑949413 | gTTTGCCGGGGTTTTTCCCGAAAATGGAACCCTTGACTGAAGAGTGGACCTTCCAGTTGGCGCTGAATGTTGAAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTgg < 2:1241205/239‑1 (MQ=255)gTTTGACGGGGATCTTCCCGAAAATGGAAGCCTTCACTGCAGAGTGGACCTTCCAGTTGGCGCTGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTgg < 1:75996/239‑1 (MQ=255) cGGGGATCTTCCCGAAAATGGAAGCCTTCACTGCAGAGTGGACCTTCCAGTTGGCGCTGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGataat < 1:1347582/238‑1 (MQ=255) ttCCCGAAAATGGAAGCCTTCACTGCAGAGTGGACCTTCCAGTTGGCGCTGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGa < 1:1427244/239‑1 (MQ=255) cccGAAAATGGAAGCCTTCACTGCAGAGTGGACCTTCCAGTTGGCGCTGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTTGgtaataaaaacggaga > 2:763254/1‑229 (MQ=255) tGGAAGCGTTCTCTGCAGAGGGGGCCTGCAAGGTGGCTCGGAATGTTGCAACCGCTTTGGTGCTGGTAGGATTAGGACTGAGATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCATATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGTACg < 2:1243469/239‑1 (MQ=255) tGGAAGCCTTCACTGCAGAGTGGACCTTCCAGTTGGCGCTGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACg < 1:467575/239‑1 (MQ=255) ttCACTGCAGAGTGGACCTTCCAGTTGGCGCTGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGAc < 1:434212/230‑1 (MQ=255) cACTGCAGAGTGGACCTTCCAGTTGGCGCTGAATTTGGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTc < 2:478358/239‑1 (MQ=255) cACTGCAGAGTGGACCTTCCAGTTGGCGCTGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGa < 1:141839/219‑1 (MQ=255) cTGCAGAGTGGACCTTCCAGTTGGCGCTGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCa < 1:1337286/239‑1 (MQ=255) tGCAGAGTGGCCCTGCCAGTTGGCGCTGAATGTGGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAg < 2:548163/239‑1 (MQ=255) agagTGGACCTTCCAGTTGGCGTTGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGAAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTc < 1:1112224/238‑1 (MQ=255) agagTGGACCTTCCAGTTGGCGCTGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTc < 1:1060947/238‑1 (MQ=255) ccTTCCAGTTGGCGCTGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTa < 1:305253/238‑1 (MQ=255) tCCAGTTGGCGCTGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTTTATAATAAAACT‑GGAAACCCGGGGGCTCTGTGCTCCCGTCTTCCACTacac > 1:1493084/1‑238 (MQ=255) aggAATGTGGCAAGGCCGTTTGGGCTGGTAGTGTGAGGACTGATATGCCCGCTGCTGGGGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGATCCGTTTGTACATAATCGAGAAATGCGCGCAAGCCTCAGGCCATATACTGGCGGTTTTGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGAc < 2:1462559/237‑1 (MQ=255) tGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGAcc < 1:950038/239‑1 (MQ=255) tGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGAc < 1:984363/238‑1 (MQ=255) aaTGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGAc < 1:606765/236‑1 (MQ=255) ttGCAACGCCGTTTGTGCGGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTAt < 1:1059045/238‑1 (MQ=255) tGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTTGGTAATAAAAAT‑TGGAGCCTCGGGGCCCTTTCCTCCAACCTTCTAGTACAAATTCTAaacaacaacgataa > 2:812228/1‑231 (MQ=255) ggCAACACCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCa < 2:456730/238‑1 (MQ=255) aaCGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAgg < 1:960094/239‑1 (MQ=255) aaCGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAg < 1:215090/238‑1 (MQ=255) aCGCCGTTTTGGCTGGTAGGATTAGGATTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGt < 2:1773745/239‑1 (MQ=255) aCGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGt < 1:1366398/239‑1 (MQ=255) cGCCGTTTGTGCTGGTAGGGTTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGCTTGGGTAATAGAACT‑TGGAGCCTGGAAGCTCTGCGCTCCAATCCTCCCGTACACATTCTAAACAACCAGTATTaacgcc > 1:1462559/1‑235 (MQ=255) cGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTa < 2:703731/211‑1 (MQ=255) cGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTa > 1:703731/1‑211 (MQ=255) cGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTaca < 1:1739881/210‑1 (MQ=255) gTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGAc < 1:968710/222‑1 (MQ=255) gCTGGTAGGATTGGGACTGTGATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGAt < 2:863948/238‑1 (MQ=255) tgttAGGTTTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCt < 2:617102/235‑1 (MQ=255) tGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCt < 1:817558/238‑1 (MQ=255) ggTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTTGGTAATAGATTTGGGAAGCC‑GGAGGCGCTGTTGCCCAGTCTTCCAGGACACATTCTaaaa > 2:1739881/1‑209 (MQ=255) tAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTTGGTAAAAGATCT‑GGAAGCCCGGAAGCTCTGTGCTCCCGTCTTTCAGGACACCATCTAAACGAACAGTATCAAAGGACTCCTTGATCTTTTc > 1:1313598/1‑239 (MQ=255) aTTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATa < 1:692638/238‑1 (MQ=255) ttAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGt < 1:901758/218‑1 (MQ=255) aCTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTcc < 1:889306/218‑1 (MQ=255) atatTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTgg < 2:776996/135‑1 (MQ=255) atatTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTgg > 1:776996/1‑135 (MQ=255) atatTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTTGGTAATAGAAAT‑TGAAGCCTGGACGCGCTGTGTTCCAGTCTTCCACTACACATTTTAAACCACCCATCAAAACGGACTCCTTCAACTGTTCTTagagaacaaaa > 2:761887/1‑231 (MQ=255) tgctgGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTTGATAATAGATCT‑TGAAGCCTGGACGCTCTGTGCTCCCGTCTTCCCGTAAACATTCTAAAAGAACAGTATCAAGGGACTCCTTGATCTGTTCATAGAGCAGATACCCCATACCAGc > 1:402933/1‑239 (MQ=255) gggggCGAGTAAAGCGAATATTAATAAATTGTTTTGGTCGGAGACGCTGACTCTGGTAGATCTGACCCGGTTTTGCAGAATCGAGAAATGTGTGCAAGCCGCAGGACATATGCTGGCGGTTTGGATAATAGTTCT‑GGAAGCGTGGACGGTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTTCTCCTTGATGTGTTCATAGAGCATATACCCGATACCAGCa < 2:1445134/236‑1 (MQ=255) gctgGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGGTAATAAATCT‑TGAAACCTGGACGCCCTGTGCTCCAGTCTTCCCGTACAAATTCTAAACGACCAGTATCAAAGTACTCCTTGATCTTTTCTTAGAGCAGAAAccccaaaacacc > 1:1784453/1‑229 (MQ=255) gctgGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCa < 1:343617/239‑1 (MQ=255) gctgGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCa < 1:252191/239‑1 (MQ=255) tAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTaaa < 1:164455/173‑1 (MQ=255) aaaGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑Caaa < 1:1771747/238‑1 (MQ=255) aaTAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACGTATACTGGCGGTTTTGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCCCCCGTCTTCCAGTACACATTCTAAACGACCACTATCAAAGGACTCCTTTCTCTGTTCATAGAGGAGATACCCGAAACCACCACCCAT‑CAAAACAGcc > 2:147961/1‑238 (MQ=255) aataatTATTGTGGTCGGTGACGCTGTCTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTc < 1:1757426/239‑1 (MQ=255) aataatTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAAAAGATCT‑GGAAACCTGGACGCCCTGTGCTCCCGTCTTCCAGGACACATTCTAAACGACCAGGATCAAAGTACTCCTTGATCTGTTCATAGAAAAGATAACCGAAACCCACACCCAT‑CAAAACGGCCTcccgctc > 1:1326503/1‑234 (MQ=255) aatTATTGTGGTCGGTGACGCTGACTCTGGCAAATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGc < 1:1599662/195‑1 (MQ=255) attattGGGGTCGGGGACGCTGACTCGGGCATCTCTGACCCTTTTTTACATAATCGAGAAATGCGCGAAAGCCGCAGGACATATACTGGCTGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCa < 2:1027162/239‑1 (MQ=255) ttGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTTGGTAATAAATCT‑TGAAACCTGGACGCCCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAAGTAATCCCTTATCTGTTCATAGAGCAGATACCCGATACCAGCACCCCT‑CAAAAAGGCCCCCAGTTCAGCATCa > 1:1824978/1‑238 (MQ=255) gTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTTGATAAAAGAACT‑GGAAGCCCGGGCGCCCTGTGGTCCAGGCTTCCAGTACACAATTTAAACGAACAGAATAAAGGGACTCCTCGTTTTTTTCATAAAGCAGATAACCGACACAAGCACCCAT‑CAAAACGAGCTCCAATTCAGCATCAAcatca > 2:271662/1‑239 (MQ=255) gTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGataa < 1:311023/92‑1 (MQ=255) gTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGGTAAAAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTTCCGTACACATTCTAAACGACCCGGATCAAGGGACTCCTTGATCTGTTTATAGAGCAGATACCCCATACCAGCACCCAT‑CAAAAAAGCCTCCAGGTCAGCATCAAcatca > 1:1590816/1‑239 (MQ=255) gTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTCTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGataa > 2:311023/1‑92 (MQ=255) tGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGAc > 1:1717907/1‑145 (MQ=255) tGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGAc < 2:1717907/145‑1 (MQ=255) tGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGCTTGGATAAAAAAACT‑GGAAACCTGGAAGCTCTGTGCTCCAGTCTTTCCGTACACACTCTAAAAGACCAGAATTAAGGTACTCCTTGATATGTTCATAGAGCAGATACCCGATAACACAACCCAC‑CCAAACAGCCTCCCGATCAGCATAAAcatcccacca > 2:219228/1‑233 (MQ=255) aCGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGa < 1:147961/238‑1 (MQ=255) tGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGCCATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGa < 2:1696153/238‑1 (MQ=255) aTCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTTGATAATAGATCT‑GGAAGCCTGGGCGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCCACATCAACAACATCCAGCATGATATTTCCTGCGAc > 1:2722/1‑239 (MQ=255) cccGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTTGGTAAAAAATCT‑GGGAGCCTGGGCGCTCTGGGCTCCCGTCTTTCCGTAAACATTCTAAACGACCAGGATCAAGGGACACCTTTAACTGTTTATAGAGCAGATACCCGATACCCGCCACCAT‑CCAAAAGGCCTCCAGTTCAGCATACACAACAACCAGAATGATAATTCCTGCGACAgacat > 2:214761/1‑235 (MQ=255) tttACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAg < 1:214761/239‑1 (MQ=255) aTCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTTGGTAAAAAATCT‑GGAAGACCGGGCGCTCTTTGCTCCCGTCTTCCCGTAAACATTCTTAACCAACAGTATCAAAGTAATCCTTTTTTTGTTCATAAAACAGATACCCGCTACCAAAACCCATCCAAAACCG‑CTCCCCTTCAGCACAAAAAACAACCACAAAGATATTTTCTCCTCCAGCAAATTTCAACTCCctt > 2:381548/1‑238 (MQ=255) aTCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAAAAAAAAT‑GGAAGCCCCGGCGCTCTTTTCTCCAGAGTTCCCGTAAACAATATAAAAGAACAGAAACAAGGGACTCCTTTATCTGTTCATAAAACAAAAAACCGATACCACCACCCAC‑CAAAAAGGCCCTCACTTCCACAACAACATCCTCCAGAAGAATATTTCCTGCCACCACAACTTCCAGCTCCtttt > 2:626801/1‑238 (MQ=255) tCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTTGGAAATAAAACT‑GGAAGGCTCGGCGCCCTTTGCTCCCGTCTTCCAGTACAAATTTTAAAACACCAATATCCAAGGACTCCTTTTTCTGTTCATATAGCAAATAACCCAAACCCACACCCCC‑CAAAACCGGCTCCCGGTTAGCATCAACAATATCCAGAAAGATATTTCCTGCCACAACAATTTCCacaccccttgc > 2:105598/1‑229 (MQ=255) tCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTc < 1:880592/176‑1 (MQ=255) aggcgcgcAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGc < 2:1313598/237‑1 (MQ=255) aGGACATATGCTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGGATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGttt < 2:1236694/238‑1 (MQ=255) gccATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGc < 1:701734/220‑1 (MQ=255) cATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCg < 1:271159/238‑1 (MQ=255) cATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGc < 1:761887/239‑1 (MQ=255) cATACACTGGCGGTTTGGGTAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCg < 2:1784453/238‑1 (MQ=255) aCTGGCGGTTATGATAATAGATCT‑GGAAGCCTGGACGTTCAGTGCTCCAGTCTTCCTGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATATAGCAGATACGCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCAATAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCTTTTGCATATTGCCAGTGGACAGTTTTGACGCTGGGa < 2:1349095/239‑1 (MQ=255) ggCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATaa < 1:812228/239‑1 (MQ=255) tttGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGaa < 1:271662/238‑1 (MQ=255) tGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGaaaaa < 1:626801/239‑1 (MQ=255) tGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATATGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGaaaaa < 1:1711053/239‑1 (MQ=255) | GTTTGACGGGGATCTTCCCGAAAATGGAAGCCTTCACTGCAGAGTGGACCTTCCAGTTGGCGCTGAATGTTGCAACGCCGTTTGTGCTGGTAGGATTAGGACTGATATTCCCGCTGCTGGCGCGTAAAGCGAATAGTAAATAATTATTGTGGTCGGTGACGCTGACTCTGGCAGATCTGACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCT‑GGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCAT‑CAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGAAAAA > NC_007779/948939‑949413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |