New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 1805805	207 (1.100)	12 (0.070)	5/380	NT	5.5%	pseudogene (998/1900 nt)	Y75_RS09060	ShET2/EspL2 family type III secretion system effector toxin
	?	NC_007779	= 1805989	213 (1.200)					pseudogene (1182/1900 nt)	Y75_RS09060	ShET2/EspL2 family type III secretion system effector toxin

ATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/1805560‑1805805 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctattctgcGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGGTCTGAGCA  <  NC_007779/1805989‑1805753                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATATGTCCGCGATTTTATATATAGACAATCAAACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCT                                                                                                                                                                                                                                                      >  1:808156/1‑239   ATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCCGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTAT                                                                                                                                                                                                                                                    >  2:1657725/1‑239       CCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTG                                                                                                                                                                                                                                                <  2:77720/239‑1       CCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTG                                                                                                                                                                                                                                                <  1:505473/239‑1       CCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTAATAGATATGTTCGCAACTGTGCAATTGCTATTCTG                                                                                                                                                                                                                                                <  2:673769/239‑1         GCGATTTTATATATAGACAATCATACTTTGTCAGTTAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGC                                                                                                                                                                                                                                               >  2:591826/1‑238         GCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGC                                                                                                                                                                                                                                               >  1:391137/1‑238         GCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGCGCAATTGCTATTCTGC                                                                                                                                                                                                                                               >  2:2162606/1‑238                                                     AATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTG                                                                                                                                                                                                                                                >  2:827176/1‑193                                                     AATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTG                                                                                                                                                                                                                                                <  1:827176/193‑1                                                          AGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTG                                                                                                                                                                                                                                                <  2:1031419/188‑1                                                          AGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTG                                                                                                                                                                                                                                                >  1:1031419/1‑188                                                                                      TGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTG                                                                                                                                                                                                                                                >  2:1808614/1‑160                                                                                      TGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTG                                                                                                                                                                                                                                                <  1:1808614/160‑1                                                                                           TGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTG                                                                                                                                                                                                                                                >  1:559883/1‑155                                                                                           TGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTG                                                                                                                                                                                                                                                <  2:559883/155‑1                                                                                                                                                         GGCTTTCTTTCGCTTGATAATTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCA                                                                                                                                                                                                    >  2:2260211/1‑137                                                                                                                                                         GGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATA                                                                                               >  2:1177649/1‑238                                                                                                                                                         GGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGAT                                                                                                                                   >  2:2156980/1‑202                                                                                                                                                         GGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGAT                                                                                                                                   >  2:2024842/1‑202                                                                                                                                                         GGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGAT                                                                                                                                   <  1:2024842/202‑1                                                                                                                                                         GGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGAT                                                                                                                                   <  1:2156980/202‑1                                                                                                                                                         GGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCA                                                                                                                                                                                                    >  1:688077/1‑137                                                                                                                                                         GGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCA                                                                                                                                                                                                    <  1:2260211/137‑1                                                                                                                                                         GGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTAATATTTCAATGATTTCTTTTTCAGGGAGTATGGGCA                                                                                                                                                                                                    <  2:688077/137‑1                                                                                                                                                                                       TCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACAGTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCA                                                                   <  1:1177649/236‑1                                                                                                                                                                                                                         ATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGAT                                                                                                                                   <  1:1212665/138‑1                                                                                                                                                                                                                         ATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGAT                                                                                                                                   >  2:1212665/1‑138                                                                                                                                                                                                                                             GCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGG          >  1:1431168/1‑239                                                                                                                                                                                                                                             GCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGG          >  1:345711/1‑239                                                                                                                                                                                                                                             GCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGG          >  2:1300408/1‑239                                                                                                                                                                                                                                                ATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACCTATCTATCAGCCCAGG          >  2:2040405/1‑236                                                                                                                                                                                                                                                ATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGAGGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGAACAGTTGCGAACATATCTATCAGCCCAGG          >  1:2214988/1‑236                                                                                                                                                                                                                                                  TCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGGTCTGA     <  1:1814616/239‑1                                                                                                                                                                                                                                                      CGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGGTCTGAGCA  >  2:27548/1‑238                                                                                                                                                                                                                                                      CGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGGTCTGAGCA  >  1:1183137/1‑238                                                                                                                                                                                                                                                      CGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCA                                                                   >  2:302828/1‑173                                                                                                                                                                                                                                                      CGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCA                                                                   <  1:302828/173‑1                                                                                                                                                                                                                                                      CGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAA                                                                         >  2:1136224/1‑167                                                                                                                                                                                                                                                      CGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAA                                                                         <  1:1136224/167‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/1805560‑1805805 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctattctgcGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGGTCTGAGCA  <  NC_007779/1805989‑1805753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.