New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	3970002 =	162 (0.860)	10 (0.050)	5/388	NT	5.7%	coding (822/1650 nt)	treF	alpha,alpha‑trehalase TreF
	?	NC_007779	3970183 =	171 (0.940)					coding (641/1650 nt)	treF	alpha,alpha‑trehalase TreF

ATGCATGGCCGATAACTTCGCCTGGATGATCGAAAACTACGGTCACATCCCCAACGGCAACCGCACCTATTATTTGAGCCGCTCGCAACCACCGGTTTTTGCGCTGATGGTGGAGTTGTTTGAAGAAGATGGTGTACGCGGTGCGCGCCGCTATCTCGACCACCTTAAAATGGAATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_007779/3970242‑3970002 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcggTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGTCGA  >  NC_007779/3970183‑3970420                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATGCATGGCCGATAACTTCGCCTGGATGATCGAAAACTACGGTCACATCCCCAACGGCAACCGCACCTATTATTTGAGCCGCTCGCAACCACCGGTTTTTGCGCTGATGGTGGAGTTGTTTGAAGAAGATGGTGTACGCGGTGCGCGCCGCTATCTCGACCACCTTAAAATGGAATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGC                                                                                                                                                                                                                                                  <  2:1123846/239‑1                                                                             AGCCGCTCGCAACCACCGGTTTTTGCGCTGATGGTGGAGTTGTTTGAAGAAGATGGTGTACGCGGTGCGCGCCGCTATCTCGACCACCTTAAAATGGAATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTT                                                                                                                                                                       >  1:1139626/1‑238                                                                             AGCCGCTCGCAACCACCGGTTTTTGCGCTGATGGTGGAGTTGTTTGAAGAAGATGGTGTACGCGGTGCGCGCCGCTATCTCGACCACCTTAAAATGGAATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTT                                                                                                                                                                       >  1:690592/1‑238                                                                             AGCCGCTCGCAACCACCGGTTTTTGCGCTGATGGAGGAGTTGTTTGAAGAAGATGGTGTACGCGGTGCGCGCCGCTATCTCGACCACCTTAAAATGGAATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTT                                                                                                                                                                       >  2:1945862/1‑238                                                                                                                                                                              AATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGC                                                                     >  1:1273350/1‑239                                                                                                                                                                              AATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGC                                                                     >  1:1846540/1‑239                                                                                                                                                                              AATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGC                                                                     >  1:2038237/1‑239                                                                                                                                                                              AATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGGTTGCCGTTGGGGATGTGACCGTAGTT                                                                                                                                                                                                                      >  2:36990/1‑94                                                                                                                                                                              AATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGGTTGCCGTTGGGGATGTGACCGTAGTT                                                                                                                                                                                                                      <  1:36990/94‑1                                                                                                                                                                                    CCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCA                                                                 <  2:2038237/237‑1                                                                                                                                                                                                 CGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACG                                                  <  2:1139626/239‑1                                                                                                                                                                                                                                            GTGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCT        <  2:2092539/238‑1                                                                                                                                                                                                                                             TGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTG       <  1:2073362/238‑1                                                                                                                                                                                                                                             TGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCC                                                                                              >  1:1748707/1‑151                                                                                                                                                                                                                                             TGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCC                                                                                              <  2:1748707/151‑1                                                                                                                                                                                                                                               CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGTC    >  1:1957490/1‑239                                                                                                                                                                                                                                               CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGTC    >  1:419070/1‑239                                                                                                                                                                                                                                               CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGTC    >  1:543221/1‑239                                                                                                                                                                                                                                               CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGTC    >  2:2206662/1‑239                                                                                                                                                                                                                                               CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGTC    >  1:1012031/1‑239                                                                                                                                                                                                                                               CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGT     <  2:2080628/238‑1                                                                                                                                                                                                                                               CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGAC                                                      >  1:106572/1‑189                                                                                                                                                                                                                                               CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGAC                                                      <  2:106572/189‑1                                                                                                                                                                                                                                               CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGC                                                                                                                                                       <  2:1961723/92‑1                                                                                                                                                                                                                                               CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGC                                                                                                                                                       >  1:1961723/1‑92                                                                                                                                                                                                                                                 GTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGC                                                                        <  2:778120/169‑1                                                                                                                                                                                                                                                 GTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGC                                                                        >  1:778120/1‑169                                                                                                                                                                                                                                                 GTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAAT                                                                                                                             <  1:1019353/116‑1                                                                                                                                                                                                                                                 GTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAAT                                                                                                                             >  2:1019353/1‑116                                                                                                                                                                                                                                                 GTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCAGACCACATTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGGGATCCTGTGGTTCGCGGGTTAGCACCGGCCCCAGCTGGTCGA  >  2:850628/1‑239                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATGCATGGCCGATAACTTCGCCTGGATGATCGAAAACTACGGTCACATCCCCAACGGCAACCGCACCTATTATTTGAGCCGCTCGCAACCACCGGTTTTTGCGCTGATGGTGGAGTTGTTTGAAGAAGATGGTGTACGCGGTGCGCGCCGCTATCTCGACCACCTTAAAATGGAATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_007779/3970242‑3970002 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcggTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGTCGA  >  NC_007779/3970183‑3970420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.