New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 = 374680530 (0.160)4 (0.020)
+CATTATCGAGTTTTGCCTGCTGGTG		 4/350 NT 23.4% pseudogene (104/375 nt) Y75_RS18580 tryptophan permease
?NC_007779 = 3746914 0 (0.000)intergenic (‑6/‑29) Y75_RS18580/Y75_RS18585 tryptophan permease/IS5‑like element IS5 family transposase

CGCCCGCCGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATG  >  NC_007779/3746814‑3747062
                                                                                                    |                                                                                                                                                    
cacccgccgtGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGATcaccagcagtcaaaactcgataatgccgtgctgttaaccttcctgccacctgcgttgttgtatctgatcttcccgaactgctttatttacgggatcggcggtgccgggctgtgcgccaccatctgggcggtcattatt            >  1:2077236‑M2/3‑101 (MQ=255)
  cccgccGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAAcaccagcaggcaaaactcgataatgccgtgctgttaaccttcctgccacctgcgttgttgtatctgatcttcccgaacggctttatttac                                                            <  1:337338‑M2/189‑91 (MQ=255)
  cccgccGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAAcaccagcaggcaaaactcgataatgccgtgctgttaaccttcctgccacctgcgttgttgtatctgatcttcccgaacggctttatttac                                                            >  2:337338‑M2/1‑99 (MQ=255)
           ggAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAAcaccagcaggcaaaactcgataatgccgtgctgttaaccttcctgccacctgcgttgttgtatctgatcttcccgaacggctttatttacgggatcggcggtgtccgggcttgcgccaccccccgggcgggccttatttccgccctgc  <  2:2077236‑M2/238‑149 (MQ=255)
                                                                                                    |                                                                                                                                                    
CGCCCGCCGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATG  >  NC_007779/3746814‑3747062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.