| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 283,224 | T→G | 24.6% | L267R (CTG→CGG) | yagF → | xylonate dehydratase YagF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 283,224 | 0 | T | G | 24.6% | 55.0 / 2.3 | 31 | L267R (CTG→CGG) | yagF | xylonate dehydratase YagF |
| Reads supporting (aligned to +/- strand): ref base T (13/10); new base G (2/6); total (15/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.20e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCGGGGAAGACGCGGGCAAGGTGCAGACCATCGGCGCGCGTTTCGCCAACCACGAACTCTCCCTGCAGGAGGCCGCCGAACTGGGCTGTCGCGCCTGCGCCTCGCCGGGCGGCGGGTGTCAGTTCCTCGGCACGGCGGGCACCTCGCAGGTGGTCGCGGAGGCGCTGGGTCTGGCGCTGCCGCACTCCGCGCTGGCGCCGTCCGGGCAGGCGGTGTGG‑CTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCGGACGTTGAGCACTGGACGCGCATCAACCGTAAAGTGCCGCGTCTGGTGAGCGT > NC_007779/283005‑283461 | tCGGGGAAGACGCGGGCAAGGTGCAGACCATCGGCGCGCGTTTCGCCAACCACGAACTCTCCCTGCAGGAGGCCGCCGAACTGGGCTGTCGCGCCTGCGCCTCGCCGGGCGGCGGGTGTCAGTTCCTCGGCACGGCGGGCACCTCGCCGGTGGTCGCGGAGGCGCTGGGTCTGGCGCTGCCGCACTCCGCGCCGGCGCCGGCCGGGCCGGCGGGGGGG‑CGGGGGATcgcccgcccggcc > 1:1143831/1‑234 (MQ=255) cgTTTCGCCAACCACGAACTCTCCCTGCAGGAGGCCGCCGAACTGGGCTGTCGCGCCTGCGCCTCGCCGGGCGGCGGGTGTCAGTTCCTCGGCACGGCGGGCACCTCCCCGGGGGGCGCGGAGGCGGCGGGGCCGGCGCCGCCGCACCCCCCCCTGGCGCCCCCCGCGCCGGCGGGGGGGCCGGGGGGTCGCCCCCCCGCCGGCCCCCCCGGCCCGCGGGCGGGGGAGCcgcgccctc > 2:200266/1‑233 (MQ=255) tGCAGGAGGCCGCCGAACTGGGCTGTCGCGCCTGCGCCTCGCCGGGCGGCGGGTGTCAGTTCCTCGGCACGGCGGGCACCTCGCAGGTGGTCGCGGAGGCGCTGGGTCTGGCGCTGCCGCACTCCGCGCTGGCGCCGTCCGGGCAGGCGGTGTGG‑CTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCctc < 1:1260034/230‑1 (MQ=255) cggGTGTCAGTTCCTCGGCACGGCGGGCCCCTCGCAGGGGGGCGCGGAGGCGCTGGGGCTGGCGCCGCCGCACTCCCCGCTGGCGCCGTCCGGGGAGGGGGGGGGG‑CTGGGGGTCGCCCCCCACCCCGGGCGCGCGGGCCGCGAGGTGGGGAGACCCCGCCCCCCCCCCCCGGGTGTCCTCTCCCCTAAAAACCCCGAAAACACGCTGGGGGGCCACACGGC‑GCTgggcgccgccccc > 2:794348/1‑230 (MQ=255) cTCGGCCGGGCGGGCACCTCGCAGGTGGTCGCGGGGGGGCTGGGTCTGGCGCTGCCGCACTCCGCGCTGGCGCCGTCGGGGCAGGCGGTGTGG‑CTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCctc < 1:1212106/168‑1 (MQ=255) tCGGCACGGCGGGCACCTCGCAGGTGGGCGCGGAGGCGCTGGGGCTGGCGCTGCCGCACTCCGCGCCGGCGCCGTCCGGGCAGGCGGGGGGG‑CTGGGGGGGGCCCCCCCCGCGGCCCGCGCGGGCCGCGGGCTGGGGAACCCCGGCGCCACCACCCGGGGGATCCCCTCCGCTCAAAACACCGCAAACCCGACGGGGATCCACCCGCCGGTTCGGGGCCGCCCCCAATTAAcgccgca > 2:1465020/1‑232 (MQ=255) ccgaggtcgcGCAGGTGGTCGCGGAGGCGCTGGGTCTGGCGCTGCCGCACTCCGCGCTGGCGCCGTCCGGGCAGGCGGTGTGG‑CTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGGGGGCTGGAAAGCCGCGGCATCACCACGCGGGATAACCCCCCCGATAAAGCCCTCGAAAACGCGAAGGTGATCCACGCGGC‑GTTCGGCGGCCCCACCCAATTACTGCCGCCCATTTCgcc > 2:1931134/10‑236 (MQ=255) gtggtCGCGGAGGCGCTGGGTCTGGCGCTGCCGCACTCCGCGCTGGCGCCGTCCGGGCAGGCGGTGTGG‑CTGGAGATCGCCCGCCCGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGGTATCCTCTCCGATAAAGCCATCGAAAACGCGATGGGGATCCACGCGGC‑GTTCGGGGGCCCCCCCAAATTACTGCGGCACATTCCCGCCCTCGCCCCCgcggg > 2:116214/1‑238 (MQ=255) ggAGGCGCTGGGTCTGGCGCTGCCGCACTCCGCGCTGGCGCCGTCCGGGCAGGCGGTGTGG‑CTGGAGATCGCCCGCCAGTCGGCGCGCGCGGGCAGCGAGCTGGATAGCCGCGGCATCCCCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGAAGGTGATCCACGCGGC‑CGTCGGCGGCCCCACCCATTTTCCGCTGCACATTTCCGCCATCGCCCCCGCGGCCGGCCGc > 2:1881247/1‑238 (MQ=255) ggAGGCGCTGGGTCTGGCGCTGCCGCACTCCGCGCTGGCGCCGTCCGGGCAGGCGGTGTGG‑CTGGAGATCGCCCGCCAGTCGGCGCGCGCGGGCAGCGAGCCGGATAGCCGCGGCATCCCCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCCGCGGCTCCACCAATTTACTGCCGCCCATTCCGGCCCTCCCCCACGcggccggccgg > 2:1651297/1‑235 (MQ=255) ggggCGCGGGTTCTGGCGCTGCCGCCCCCCGCGCTGGCGCGGTCCGGGGAGGGGGTGGGG‑CTGGAGACCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCa < 1:1280111/236‑1 (MQ=255) ggggTGTGGCGCCGCCGACCTCCGCGCGGGCGCCGTCCGGGCGGGCGGGGTGG‑CTGGAGGCCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATccc < 1:209843/237‑1 (MQ=255) ggtgggcggcggccgccCCCCGCGGGGGCGCGGCCGGGGCGGGGGGTGGGG‑GTGGAGACCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCgg < 1:877340/227‑1 (MQ=255) ggTGTGGGGCGGCCGCACCCGGCGCTGGCGCCGTCCGGGCGGGGGGTGTGT‑GTGGGGCTGCCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCgg < 1:794348/238‑1 (MQ=255) aggggacgggccgccCGCCCCGCGGGCGCCGTCCGGGCGGGGGGTGTGG‑CTGGAGACCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCGGACg < 1:1688614/230‑1 (MQ=255) ggCGCTGCCGCACTCCGCGCTGGCGCCGTCCGGGCAGGCGGTGTGG‑CTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACCCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCCCCCATTTACTGCTGCCCATTCCGGCCATCCCCCACCCCGCGGGCTGCACCATCCCGGCCGTTg > 2:1717035/1‑239 (MQ=255) tGCCGCACTCCGCGCTGGCGCCGTCCGGGCAGGCGGTGTGG‑CTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCCCGCGGGATATCCTCCCCGATAAAGCCATCGAAAACCCGATGGTGATCCACGCGGC‑GTTCGGCGGCCCCACCAAATTACTGCTGCACATTCCGGCCCTCCCCCACCCGGCGGGCCTCCCGAACCCCGACCGTGAggc > 2:1528593/1‑236 (MQ=255) gcccGCACCCCGCGCTGGCGCCGGCGGGCGGGGAGGTGGGG‑GTGGAGACCCCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCGGACGTTGAGCAc < 1:1465020/237‑1 (MQ=255) gCCGCACTCCGCGCTGGCGCCGTCCGGGCAGGCGGTGTGG‑CTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGGCCCCCCAATTTAATGCTGCCACTTCCCGGCAACCCCCCCGCCGCGGGCCGCCCGGTCCCCGGCGGTGAGCAcc > 2:806983/1‑238 (MQ=255) gCACTCCGCGCTGGCGCCGTCCGGGCGGGCGGTGGGG‑CTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCGGACGTTGAGCACTGGa < 1:2223439/239‑1 (MQ=255) cACCCCGCGCGGGCGCGGCCGGGGCGGGCGGTGGGG‑TGGGAGCCCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCGGACGTTGAGCACTGGa < 1:1717035/238‑1 (MQ=255) gcgcGGGCGCCGCCGGGGCGGGGGGTGTGG‑CGGGAGACCCCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCGGACGTTGAGCACTGGACGCGCAt < 1:116214/239‑1 (MQ=255) gcccgggCGCCGGCCGGGGGGGCGGTGTGG‑CGGGAGACCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCGGACGTTGAGCACTGGACGCGCAt < 1:1707960/234‑1 (MQ=255) cgcTGGCGCCGTCCGGGCAGGCGGTGTGG‑CTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGCAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCGGACGCTGAGCCCTGGACGCGCATc > 1:452458/1‑239 (MQ=255) cgcTGGCGCCGTCCGGGCAGGCGGTGTGG‑CTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCCGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGGCCCCCCAATTTACTGCTGCACATTCCGGCCCTCGCCCACGCGGGGGGCTGCACGATCCCGGACGTTTAGAACTGGGCccgccc > 2:346279/1‑236 (MQ=255) gcgggCGCCGTCCGGGGGGGGGGTGTGG‑CGGGAGACCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCGGACGTTGAGCACTGGACGCGCATc < 1:337454/235‑1 (MQ=255) cggCGCGGTCCGGGCGGGCGGGGGGG‑CGGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCAACACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCTGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCGGACGTTGAGCACTGGACGCGCATCaa < 1:1931134/237‑1 (MQ=255) tCCGGGCAGGCGGTGTGG‑CTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGAGATCCACCCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCGGACg > 1:492091/1‑208 (MQ=255) tCCGGGCAGGCGGTGTGG‑CTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGACGGTGAACCACGCGGC‑GTTCGGCGGCTCCACCCATTTACTGCTGCACATTCCGGCCCTCGCCCACCCGGCGGGCCGCACGCATCCGGCCGCTTGGCACTGGCCCCCCCACCACCGTAAAgg > 2:1218730/1‑238 (MQ=255) gggggggggggTGGGG‑CTGGAGACCGCCCGCCAGTCGGCGCGCGCGGTCAGCGGGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCGGACGTTGAGCACTGGACGCGCATCAACCGTAAAGTGc < 1:860887/230‑1 (MQ=255) gcgggaGGGGGTGTGG‑CGGGAGCTCCCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCCCCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCGGACGTTGAGCACTGGACGCGCATCAACCGTAAAGTGc < 1:451078/234‑1 (MQ=255) tGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCCCGATCCCGGACGTTGAGCACTGGACGCGCATCAACCGGAAAGTGCCGCGTCTGGTGAGCgg > 2:406140/1‑237 (MQ=255) | TCGGGGAAGACGCGGGCAAGGTGCAGACCATCGGCGCGCGTTTCGCCAACCACGAACTCTCCCTGCAGGAGGCCGCCGAACTGGGCTGTCGCGCCTGCGCCTCGCCGGGCGGCGGGTGTCAGTTCCTCGGCACGGCGGGCACCTCGCAGGTGGTCGCGGAGGCGCTGGGTCTGGCGCTGCCGCACTCCGCGCTGGCGCCGTCCGGGCAGGCGGTGTGG‑CTGGAGATCGCCCGCCAGTCGGCGCGCGCGGTCAGCGAGCTGGATAGCCGCGGCATCACCACGCGGGATATCCTCTCCGATAAAGCCATCGAAAACGCGATGGTGATCCACGCGGC‑GTTCGGCGGCTCCACCAATTTACTGCTGCACATTCCGGCCATCGCCCACGCGGCGGGCTGCACGATCCCGGACGTTGAGCACTGGACGCGCATCAACCGTAAAGTGCCGCGTCTGGTGAGCGT > NC_007779/283005‑283461 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |