| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 3,894,906 | T→A | 22.6% | T236S (ACC→TCC) | yiaN ← | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 3,894,906 | 0 | T | A | 22.6% | 140.6 / 10.6 | 65 | T236S (ACC→TCC) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| Reads supporting (aligned to +/- strand): ref base T (44/4); new base A (3/12); total (48/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.47e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGACGCGGTGAATCGACCAACGGTTGCAGTAAATCAGAAACCATCATCGGCAGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGCCACCACCAGGTAAGCATCAGCGTTGCGCCCATCATCATGCCAGGGGCAATGCCCGCCATAAACAGCTTACTGATGGATAATCCGCTGGAAACGCCGA > NC_007779/3894670‑3895136 | cagACGCGGTGAATCGACCAACGGTTGCAGTAAATCAGAAACCATCATCGGCAGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTaa > 1:1498893/1‑239 (MQ=255) gcgGTGAATCGACCAACGGTTGCAGTAAATCAGAAACCATCATCGGCAGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGACATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGAAAACAg > 1:2152957/1‑238 (MQ=255) ggTGAATCGGCCAACGGTTGCAGTAAATCCGAAACCCTCATCGGCAATTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCCCTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGcc < 2:890862/239‑1 (MQ=255) ggTGAATCGACCAACGGTTGCAGTAAATCAGAAACCATCATCGGCAGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGc < 1:675778/238‑1 (MQ=255) cGGTTGCAGTAAATCAGAAACCATCATCGGCAGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAAAAACT‑GG‑GGCGACAAACAGCGCATAGAAAGAAGCAACGGCCCCGGCTTCGGAGGGGGAAAAAAGGCCGGGGCGAACCCCg > 2:217227/1‑238 (MQ=255) gTTGCAGTAAATCAGAAACCATCATCGGCAGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCa > 1:1680126/1‑239 (MQ=255) cAGTAAATCAGAAACCATCATCGGCAGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCaataa > 1:522319/1‑239 (MQ=255) cAGTAAATCAGAAACCATCATCGGCAGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCaata > 1:2040490/1‑238 (MQ=255) cAGTAAATCAGAAACCATCATCGGCAGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGGGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGGAAACAGGCCGGAGCGAAACCCGCCaataa > 2:186217/1‑239 (MQ=255) aaTCAGAAACCATCATCGGCAGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAatgatg > 1:1260171/1‑239 (MQ=255) aaaCCATCATCGGCAGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGA‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGCAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGga > 1:1658066/1‑239 (MQ=255) aCCATCATCGGCAGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGgaag > 1:489599/1‑239 (MQ=255) tcatcGGCAGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAAc > 1:2205974/1‑239 (MQ=255) catcGGCAGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACa > 1:819159/1‑239 (MQ=255) aGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTATTCGCCGCGCCAATG‑AGAACATGCCAAAGA‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACa > 1:1884594/1‑232 (MQ=255) gTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGgaaga > 1:1663661/1‑227 (MQ=255) ttCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGa > 1:296346/1‑239 (MQ=255) caacagaggTAAACGGCGAGGAGAAAACGTGCGCCGA‑GCCACCAAAAAACATAACCACGGGGGTGGGTTCCGCCGCGCAAAGG‑AGAACATGCAAAGGG‑GG‑GGCGAAGTTCATTCCCGGGAAAATAACG‑GG‑GGCGACAAACAGCGCAAAGAAGGAAGCACCGCCCCGGGTTTGGGGAGGGGAAAACAGGCCGGAGCGAACCCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATa < 2:1944701/232‑1 (MQ=255) gTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGAc > 1:1433455/1‑239 (MQ=255) ccAGGCGGAAACTTGAGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGt > 1:305932/1‑239 (MQ=255) cAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGt > 1:727254/1‑238 (MQ=255) gAAAGTTGGGCCGAGGCACCC‑AGAAACATACCCACGGAGGTGTTTTTCCCCGCGCAAATG‑AGTACATGCAAAAGG‑GG‑GGCGAAGTTCATTTCACGGTAAATAACT‑GG‑GGCGACAAACAGCGCATAAAAAGCAGCACCGGCCCCGGCTTGGGGGGGGGTAAACAGGCCGGAGAGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGa < 2:2205974/238‑1 (MQ=255) tgCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCACCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAAACCGCCAATAATGCTGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCa > 1:1071197/1‑239 (MQ=255) ggggCCCCC‑AAAAACACAACCCGGGGGGGGGTTTCGGCCGCGACAGAG‑AGTACA‑GCCAAAGTGGG‑GGCAAAGGTATTTACAAGGAAAAAAGGG‑GG‑GGGAAAAAACAGCGAAAAGAAGGCAGCAGCGGCCCGGGCTGGGGGAGGGGAAAAAGGGCCGGAGGAAACCCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCg < 2:2026171/236‑1 (MQ=255) aGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGa > 1:427609/1‑225 (MQ=255) aCATAACCGGTGGGGTGTTTTTCCCCGCACAAAGG‑AGTACA‑GCCCAAGG‑GTGGGCAAAGTTCATTCCCGGGTAAATAACG‑GG‑GGCAACAAACGGCACAAAAAAAGCCCTCGCGGCCCGGGTTTGGGGGGGAGAAAACGGGGCGGGGAGACCCCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAAAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTgg < 2:690224/239‑1 (MQ=255) aaCCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCggg > 1:1471659/1‑239 (MQ=255) cTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACaaaa > 1:827310/1‑194 (MQ=255) cTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGAAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATa > 1:2088306/1‑182 (MQ=255) tGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGGaaaa > 1:1368114/1‑238 (MQ=255) gAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGGAAAtt > 1:536307/1‑239 (MQ=255) aGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGGAAAATa > 1:880198/1‑239 (MQ=255) aGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGGAAAATa > 1:487901/1‑239 (MQ=255) gtTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGGAAATTAAggag > 1:520938/1‑237 (MQ=255) gtTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGGAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGGGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGGAAAtttaatca > 1:293727/1‑233 (MQ=255) ccgcGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCAGGCGGGGGAAAATAAAGAGACTgg > 1:1011797/1‑237 (MQ=255) cgcCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGACACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAAATAAGGCGACTGGCCTg > 1:212182/1‑238 (MQ=255) cgcAATGAAGTACAGGCAAAATG‑GG‑GGAGAAGGTTATCTCCGGGTAAATAACT‑GC‑GGAGACAAACAGCGAAAAGAAAGCGGCACCGCCCCCGGTTGGGGGGGGGGAAAACGGGCCGGAGAGAACCCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGc < 2:1433455/237‑1 (MQ=255) aaTG‑AGTACACGAAAGAGT‑GG‑GGAGAAGGTACTTGCACGGTAAATAGTG‑GG‑GGCAAAAAACAGCGCAGAGAAGGCAGCACCGGCCCCGGCTGGGGGGGGGGAAAACAGCCCGGAGAGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGccacc < 2:489599/239‑1 (MQ=255) aggagacgggt‑ga‑GGAGAAGGTCATTTCACGGTAAATAGCG‑GC‑GGCGAAAAACAGCGCAAAAAAGGCCGCACCGCCCCGGGTTGCGGTGGGGAAAAACAGGCCGGAGAAAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGCCACCACCAGGTa < 2:456340/230‑1 (MQ=255) caaaaGT‑GG‑GGGAAAGGTAATTTCGCGATAAATAACG‑GG‑GGGAACAAAGAGCACATAGAAACGCGCACCGCCCCCGGTTTCGGTGGGGGAAAACGGGGCGGAGCAAACCCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGCCACCACCAGGTa < 2:1174292/233‑1 (MQ=255) aaaGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGCCACCCCCAGGTAAGCATc > 1:1633727/1‑239 (MQ=255) aGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGCCCCCAACAGGGAAgcagca > 1:667944/1‑238 (MQ=255) aGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGGAAAATAAAGCGGCTGGCCTCCCCCCCCCCGGGAAACAtac > 2:1438382/1‑236 (MQ=255) t‑gGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGGAAAATAAGGCGACTGGCCTGCCCCCACCAGGTAAGCCTCAGCGtt > 1:660183/1‑239 (MQ=255) ggaaaaGGTCTTTTCAGGGAAAAAACGT‑GT‑GGCGAAAAACAGCGAAGAGAAAGCAGACACGCCCCGGGTTGGGGTGGGGGAAAACGGGCCGGAGCAAACCCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGCCACCACCAGGTAAGCATCAGCGtt < 2:536307/234‑1 (MQ=255) ggCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACATGCCTGCCCACACCAGGGAAGCATCAGCGTTg > 1:1392378/1‑239 (MQ=255) ggCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGGAAATTAAGGCGACTGGCCTGCCACCACCAGGTAAGCATCCGCGtt > 1:221046/1‑238 (MQ=255) ggCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGCGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGGAAATTAAGGAGACCGGCCTTCCACCCCCAGGTAAGCCTCAGCGtgg > 1:2016176/1‑237 (MQ=255) ggCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCACATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGGAAATTAAGGCGACTGGCCTCCCCCCCCCCGGTAAGCATCAGCggt > 1:773002/1‑236 (MQ=255) ttCATTTCAAGAAAATAAACG‑GT‑GGCGAAAAACGGCGAAAAAAACGCAGCACCGGCCCCGGTTGCGGTGGGGAAAAACAGGCCGGAGCAAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGACCTGCCACCACCAGGTAAGCATCAGCGTTGCGccc < 2:660183/236‑1 (MQ=255) gTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACaaaa > 1:1238349/1‑144 (MQ=255) gTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGCCACCACCAGGTAAGCATCAGCGtctggctctt > 1:456340/1‑230 (MQ=255) aattaaggggaaaaaaaCT‑GG‑GGCAAAAAAGAGCGCAAAAAAGGAAGCCCCGGCCGGGGTGGCGGAGGGGGAAAACGGCCGGGACCAAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGCCACCACCAGGTAAGCATCAGCGTTGCGCCcatca < 2:2152957/228‑1 (MQ=255) aTTTCAGGGTAAA‑AACTGGG‑GGCAAAAAACAGCAAAAAAAAAGCAGCAAGGGCCCGGGCTGGGGAGGGGGTAAACAGGCGGGAGCAAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGCCACCACCAGGTAAGCATCAGCGTTGCGCCcatcat < 1:217227/239‑1 (MQ=255) ttCACAGTAAAAAGGT‑GTGGGCAACAAACAGCGACAAGAGAGCAGCACCGCCCCGGGCGGGGGAGGGGGAAAAGGGGCGGGAGCAAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGCCACCACCAGGTAAGCATCAGCGTTGCGCCcatcatc < 2:1368114/239‑1 (MQ=255) aTAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGCCTGGCCTGCCACCACCAGGGTAGCATCAGCGGTGCGCCCATCATCATGCCAaggg > 1:1869763/1‑238 (MQ=255) aagcgggggCGACAAACGGCGCAAAGAAAGCAGCACCGGCCCGGGTTGGGGGGGGGAAAAACGGGCGGGAGAGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGCCACCACCAGGTAAGCATCAGCGTTGCGCCCATCATCATGCCAGGGGCa < 2:2162464/232‑1 (MQ=255) t‑gGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGCCCCCACCAGGGAAGCCTTAGAGTTGCGCCCCTCATCATGCCAGGGGCAAAGccc > 1:1274183/1‑239 (MQ=255) gCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGCCACCACCAGGTAAGCATCAGCGTTGCGCCCATCATCATGCCAGGGGCAAAGCCCg > 1:684958/1‑238 (MQ=255) aaaaaGCAGCACCGGCCCCGGTGGGGGGGGGGAGAAACGGGCGGGAGAGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGc < 2:197305/161‑1 (MQ=255) gcagcaACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGGAAATTAAGGCGACTGGCCTGCCACCACCAGGGAAGCATCAGCGTTGCGCCCCTCATCAGGCCAGGGGCAATGCCCCCCACAAACAGCTTACTGATGGa > 1:101462/1‑239 (MQ=255) aaCGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGGAAATTAAAGCGACTGGCCTGccacccc > 1:197305/1‑161 (MQ=255) cGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGGAAATTAAGGCGACTGGCCTGCCACCACCAGGTAAGCATCAGCg > 1:856995/1‑177 (MQ=255) ggTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGAGACTGGCCTGCCACCACCAGGGAAGCATCAGCGTTGCGCCCATCATCATGCCAGGGGCAAAGCCCGCCATAAACAGCTTACTGATGGAGAATCCGCTGGAAACGCCGa > 1:1506783/1‑239 (MQ=255) | CAGACGCGGTGAATCGACCAACGGTTGCAGTAAATCAGAAACCATCATCGGCAGTTCAGCAATGGTAATCAGCCAGGCGGAAACTTGTGCCGAGGCCACC‑AGAAACATAACCACTGAGGTGGTTTTCGCCGCGCCAATG‑AGTACATGCCAAAGT‑GT‑GGCGAAGGTCATTTCACGGTAAATAACT‑GT‑GGCGACAAACAGCGCATAGAAAGCAGCAACGGCCCCGGCTTCGGTAGGGGTAAACAGGCCGGAGCGAAACCCGCCAATAATGATGACTGGAAGAAACAGCGCCCAGATACCGGAGACAAAAGAGTGCCAGATTTCCTGCATCGTTGCTTTTTGCTGGCGGGGTAAATTAAGGCGACTGGCCTGCCACCACCAGGTAAGCATCAGCGTTGCGCCCATCATCATGCCAGGGGCAATGCCCGCCATAAACAGCTTACTGATGGATAATCCGCTGGAAACGCCGA > NC_007779/3894670‑3895136 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |