| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 75,091 | G→T | 14.3% | D130E (GAC→GAA) | thiB ← | thiamine ABC transporter substrate binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 75,091 | 0 | G | T | 14.3% | 140.9 / 2.9 | 52 | D130E (GAC→GAA) | thiB | thiamine ABC transporter substrate binding subunit |
| Reads supporting (aligned to +/- strand): ref base G (6/38); new base T (5/3); total (11/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.07e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTTTCACCTTTTAAAAAC‑AGGCCGTAGGCTTCGCTCCAGCCTTT‑GGTGACCGTGACCGTTTTCTTCG‑CCAGTTTCTGCCAGGCTTGTGGGGCG‑TCATCGCCATAGACTTTTTGCATCCATAGCAACAGACCCAGCCCCGG‑TGTACTGGTGCGCGGATCCTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTACTGTTTTTGCCTTCCATCCGTAGACGGTTGAGAAGCGAAACGCCATCTTCCAGCGCCACCAGTTTCAGT > NC_007779/74855‑75328 | cTTTCCCCTTTTAAAAAC‑GGGCCGTAGCCTTCGCTCCAGCTTTT‑GGTGACCGTGCCCTTTTTCTTCG‑CCAGTTTCTGCCAGGCTGGTGGGGCG‑TCATCGCCATAGACTTTTTGCATCCATAGCACCAGCCCCAGCCCCGG‑TGTACTGGTGCGCGGATCCTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTc < 2:411557/239‑1 (MQ=255) ccTTTTAAAAAC‑AGGCCGTAGGCTTCGCTCCAGCCTTT‑GGTGACCGTGACCGTTTTCTTCG‑CCAGTTTCTGCCAGGCTTGTGGGGCG‑TCATCGCCATAGACTTTTTGCATCCATAGCAACAGACCCAGCCCCGG‑TGTACTGGTGCGCGGATCCTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAAc < 1:466378/239‑1 (MQ=255) tctttAAAAACAAGGCCTTAGGCTTCGCTCCAGCTTTT‑GTGGACCGTGTCCTTTTTCTTCG‑CCGTTTTCTCCCAGGCTTGTGGGGGG‑TCATCGCCATGGCTTTTTTGCACCCATAGCAACAGCCCCAGCCCCGG‑TGTACTGGTGCGCGGATCCTGATAAATCCCCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAAc < 2:1138666/237‑1 (MQ=255) acggcccGTGGGTTTCCCTCCAGCCTTT‑GGGGACCGTGACCTTTTTCTTCG‑CCAGTTTCTGCCAGGCTTGTGGGGCG‑TCAGCGCCATAGACTTTTTGCATCCATAGCAACAGACCCAGCCCCGG‑TTTACTGGTGCGCGGATCCTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAg < 1:316431/234‑1 (MQ=255) gCCGTAGGCTTCGCTCCAGCCTTT‑GGTGACCGTGACCGTTTTCTTCG‑CCAGTTTCTGCCAGGCTTGTGGGGCG‑TCATCGCCATAGACTTTTTGCATCCATAGCAACAGACCCAGCCCCGG‑TGTACTGGTGCGCGGATCCTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGTGTTTTTTGATTTTTTTTGTC‑GTATACGGAAGCAAAGTAg > 2:867578/1‑238 (MQ=255) ccGGAGGCTTGGCCCCGTCGTTT‑GGGGCCCGTGACCTTTTTCTTCG‑CCATTTTCTGCAGGGCTGGGGGGGCG‑TCACCGCCATAGTCTTTTGCCACCCAAAGCAACAGCCCCCGCCCGGG‑TGTACTGGTGCGCGGTTCCTGATAAATCCCCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGc < 2:1660493/238‑1 (MQ=255) ctggcgtttCGCTCCCGTCTTTGGGTGACCGTTACCGTTTTCTGCC‑CCGTTTTCGTCCATG‑TTGTGGGGGGCTCACCTCCATAGTCTTTTTCCATCCATACAAACAGCCCCACCCCCGT‑TGTACTGGGGCGCGTTTCCTGATAAATCTCCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTTTC‑ATAAACGAAGGCGAAGTAGc < 2:1797199/231‑1 (MQ=255) cgtggtctCGCCCCCGCCTTT‑GGGGGCCGGTGCCCTTTTCCTCGCCCAGTTTCTCCCGGGTTTGTGGGGCG‑CCATCGCCATGGACTTTTTCCACCCAAAGCACCAGCCCCACCCCGGT‑TGTCCTGGGGCGCGGTTCTTGATAAATCCCCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCa < 2:1531969/232‑1 (MQ=255) tCGCTCCAGCCTTT‑GGTGACCGTGACCGTTTTCTTCG‑CCAGTTTCTGCCAGGCTTGTGGGGCG‑TCATCGCCATAGACTTTTTGCATCCATAGCAACAGACCCAGCCCCGG‑TGTACTGGTGCGCGGATCCTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTTTGTTTTTTTTTTTT‑TTATACAAAGAAGAAGTAGGCAC‑aaaccaa > 2:31698/1‑234 (MQ=255) tCGCCCCGGCCTTG‑GGGGCCCGTGCCCGTTTTCTCCG‑CCAGTTCCTGCCAGGCTTGGGGGGCG‑TCAGCGCCATAGACTTTTTGCATCCATAGCAACAGACCCAGCCCCGG‑TGTACTGGTGCGCGGATCCTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCaaa < 1:31698/239‑1 (MQ=255) cGCTCCAGCCTTT‑GGTGACCGTGACCGTTTTCTTCG‑CCAGTTTCTGCCAGGCTTGTGGGGCG‑TCATCGCCATAGACTTTTTGCATCCATAGCAACAGACCCAGCCCCGG‑TGTACTGGTGCGCGGATCCTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGGGTGTTTGTTTGTTTTTTTCTTTAAACTAATG‑GGAGGAGCCAT‑AATaaaaa > 1:1519575/1‑238 (MQ=255) ttt‑GGTGCCGTTGACCGTTTTCTTCG‑CCAGTTTCTGCCAGGCTGGGGGGGCG‑TCATCGCCTTAGACTTTTTGCATCCATAGCAACAGCCCCAGCCCCGT‑TGTACTGGTGCGCGGATCCTGATAAATCCCCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAg < 1:1254812/239‑1 (MQ=255) ttt‑GGTGCCCGTAACCGTTTTCTTCC‑CCAGTTTCCGCCAGGCTTGTGGGGCG‑TCATCGCCTTAGCCTTTTTGCACCCATAGCAACAGACCCAGCCCCGG‑TGTACTGGTGCGCGGTTCCTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAg < 1:1526471/239‑1 (MQ=255) ggTGACCGTGACCGTTTTCTTCG‑CCAGTTTCTGCCAGGCTTGTGGGGCG‑TCATCGCCATAGACTTTTTGCATCCATAGCAACAGACCCAGCCCCGG‑TGTACTGGTGCGCGGATCCTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGGTTTTATGGTTTTTTTTTTT‑ATTAACGAAAGGGAAAGAGTCTT‑AATCAAAAGGGACTAAAgag > 1:1223922/1‑236 (MQ=255) tGCCAGGCTTGTGGGGCG‑TCATCGCCATAGACTTTTTGCATCCATAGCAACAGACCCAGCCCCGG‑TGTACTGGTGCGCGGATCCTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGCGGGGTTTTTTGTTTTGTTTTTTTT‑TTAAA‑AAAGGGGAAAGAGCCAT‑AATCCAAACGTACGAAAAGGTCATTATTTCTACCCCCCGGAAAGTTaaacg > 1:15639/1‑235 (MQ=255) cAGGCTTTTGGGGCG‑TCATCGCCACAGATTTTTTGCATCCATAGCAACAGCCCCAGCCCCGG‑TGTCCTGGTGCGCGGTTCCTGAAAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATc < 1:2260924/239‑1 (MQ=255) gtgtggggggCC‑ACAGCGCTATAGCTTTTTTGCATCCATAGCAACA‑CCCCCGCCCCGGTTGTGCGGGTGCGCGGATCTTTATAAACCCCCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATc < 2:15639/230‑1 (MQ=255) gcgttCATCGCCATGGCCTTTTTGCATCCAAAGAACCAGCCCCACCCCCGG‑TGTACTGGTGCGCGGTTCCTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCcaca < 1:967186/234‑1 (MQ=255) cG‑TCATCGCCATAGACTTTTTGCATCCATAGCAACAGACCCAGCCCCGG‑TGTACTGGTGCGCGGATCCTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTTCGTTTTTTTTTTTT‑ATTAAATAAAGGGAAGGAGCCGTAAATAAAAAGGAAGGAAATGGTCATTTTTCAACCCCCGGGGAAAG‑TAAAGGCACCCCCTGCCACAcc > 1:1274590/1‑238 (MQ=255) cgtCGCCATAGACTTTTTCCATCCATAGCAACAGACCCAGCCCCGG‑TGTCCGGGTGCGCGGATCTTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCtt < 1:334568/237‑1 (MQ=255) tggACTTTTGGCTTCCATCACACCACCCCCAGCCTCCG‑TGTCCTGCTGCGCGGATCTTGAAAATTCCCCCGTCGGTTTTTATCCCTCTCAACCAGTTCTTTCAGGCTTTGTGGG‑GGTTTTTTCAGTTTGTTCTGGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCaaa < 2:208574/237‑1 (MQ=255) tttttGCACCCTTACCACCAGCCCCACCCCTGG‑TGTACGGGTCCACGGTTCCTAAAAAATCCCCCGCCAGTTTTGATCGCTCTCAACCAGTGCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTc < 1:1970085/239‑1 (MQ=255) tttcagagccATAGCAGCACGCCCAGCCCCGG‑TATACGGTGGCCCAGCAGCTAAAAAAGCTCCCGCAAGTTTTGATCGATCTAACCCAGTTCTTTCAGGCTTTGTGGG‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAGCGGTACGAAGGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTcc < 2:789559/231‑1 (MQ=255) aTAGCAACAGACCCAGCCCCGG‑TGTACTGGTGCGCGGATCCTGATAAATCCCCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGa < 1:1235048/159‑1 (MQ=255) ccaccAGCCCCACCCCCGG‑GTTGGTGGTGGCCGCACCCTAATAATTCCCCCGCCGGTTTTGATCGCTCTCAACCAGTTCTTCCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTggcg < 2:1344462/235‑1 (MQ=255) acAAAAGCCCCGGCCCGGG‑TTTCCTGGTGCGCGTTTCCTAATAATCCCCCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCGTCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTggcg < 1:757882/238‑1 (MQ=255) aaaCAGACCCAGCCCGGG‑TGTACTGGTGCGCGGATCCTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACg < 1:1409536/148‑1 (MQ=255) cccggcccggG‑TGTACTGTTGCGCGGTTCCTGAAAATTCTCCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTaa < 1:1516302/239‑1 (MQ=255) ccatgCCCGGG‑TTTACTGGTGCGCGGATCCTAAAAACTCGCCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTaa < 1:156998/235‑1 (MQ=255) gcgccttgg‑TTTACTGGTGGCGGGTTCGTTAAAAATCGCCCGCCGGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGGGGC‑GGGTTTTTCAGTTTCTTCTGGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTGTTGGCAAACAGTCCGGTTTTCCTGGCGGCGTCTAACa < 2:1223922/232‑1 (MQ=255) cggCCCGGG‑TGCTCGGGCGCGCGGTTCCTGATAATTACCCCGCCAGTTTTGATCGCGCTCAACCAGTTCTTTCAGGTTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACa < 2:2033721/237‑1 (MQ=255) ccGG‑TTTCCTGGTGCGCGGTTCCTGATAAATCCCCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGgttg < 1:49756/239‑1 (MQ=255) acgggagcgcGGATCCTGAAAAATCCCCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGTTTGTTATCCa < 1:2245409/233‑1 (MQ=255) gcgGCTCCTGTAAAATCCCCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGCTTGTTATCCAGCCCCAGc < 1:685706/239‑1 (MQ=255) ttgaaatacccccccccAGTTTGGATGGCCCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCATTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAACCGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACAt < 2:1407932/228‑1 (MQ=255) tcccccGCCAGTTTTGATCGCTCTCAACCAGTTCTTTAAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTGCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑ACTCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTa < 1:2035870/236‑1 (MQ=255) tCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTa < 1:1514015/239‑1 (MQ=255) ccccccGCCAGTTTTGATCGCTTTCAACCAGTTCTTTCAGGCTTTGGGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAGGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTa < 2:717004/236‑1 (MQ=255) caccccGCCGATTTTGATCCCTCTCAACCAGTTCTTCCGGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTGTTC‑ATAACCGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTa < 2:179191/236‑1 (MQ=255) ttttGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCa < 1:162388/205‑1 (MQ=255) tttGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTACTGTTTTTg < 2:1467900/236‑1 (MQ=255) ttGCTCGCTTTCAACAAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTACTGTTTTTGCCtt < 1:867578/239‑1 (MQ=255) tGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTACTGTTTTTGCCTTc < 1:1581191/239‑1 (MQ=255) ctcATCCATTTCTTTCAGGCTTTGTGGC‑GGTTTTTTCAGTTTGTTATTTTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTACTGTTTTTGCCTTCCATCCGTa < 2:1301619/239‑1 (MQ=255) ctcAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTACTGTTTTTGCCTTCCATCCGTa < 1:723345/239‑1 (MQ=255) catccAGTTCTTTCAGGCTTTTTGGG‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAATTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTACTGTTTTTGCCTTCCATCCGTAGa < 1:2035140/236‑1 (MQ=255) gtgGG‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTACTGTTTTTGCCTTCCATCCGTAGACGGTTGAGAAGCGAAACGCCa < 2:322725/239‑1 (MQ=255) ttGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTACTGTTTTTGCCTTCCATCCGTAGACGGTTGAGAAGCGAAACGCCATCTTCCAGCGCCACCAg > 1:1354546/1‑239 (MQ=255) ttGTTCTTGTC‑ATAAAAGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTACTGTTTTTGCCTTCCATCCGTAGACGGTTGAGAAGCGAAACGCCATCTTCCAGCGccaccgg > 1:848596/1‑237 (MQ=255) tGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTACTGTTTTTGCCTTCCATCCGTAGACGGTTGAGAAGCGAAACGCCATCTTCCAGCGCCACCAGt > 2:1616955/1‑239 (MQ=255) ttCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTACTGTTTTTGCCTTCCATCCGTAGCCGGTTGAGAAGCGCAACGCCATCCTTCAGCGCCACCAGtt > 2:145089/1‑238 (MQ=255) tGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTACTGTTTTTGCCTTCCATCCGTAGACGGTTGAGAAGCGAAACGCCATCTTCCAGCGCCACCAGTTTCAGt > 1:1121357/1‑239 (MQ=255) gTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTACTGTTTTTGCCTTCCATCCGTAGACGGTTGAGAAGCGAAAAGCCCTCTTCCAGCGccacccagttccgt > 2:1718475/1‑229 (MQ=255) | CTTTCACCTTTTAAAAAC‑AGGCCGTAGGCTTCGCTCCAGCCTTT‑GGTGACCGTGACCGTTTTCTTCG‑CCAGTTTCTGCCAGGCTTGTGGGGCG‑TCATCGCCATAGACTTTTTGCATCCATAGCAACAGACCCAGCCCCGG‑TGTACTGGTGCGCGGATCCTGATAAATCACCCGCCAGTTTTGATCGCTCTCAACCAGTTCTTTCAGGCTTTGTGGC‑GGGTTTTTCAGTTTGTTCTTGTC‑ATAAACGAAGGCGAAGTAGCCAT‑AATCAAACGGTACGAAAGTGTCATTATTCCAGCCGCCGGGAACGTTAACGGCATCCGCTGCCACACCGCTTTTGGCAAACAGTCCGGTTTTACTGGCGGCGTCTAACAGGTTGTTATCCAGCCCCAGCACCACATCGGCTTTACTGTTTTTGCCTTCCATCCGTAGACGGTTGAGAAGCGAAACGCCATCTTCCAGCGCCACCAGTTTCAGT > NC_007779/74855‑75328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |