| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 1,586,587 | A→C | 18.8% | R538R (CGT→CGG) | ydeP ← | acid resistance putative oxidoreductase YdeP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 1,586,587 | 0 | A | C | 18.8% | 128.1 / 2.8 | 70 | R538R (CGT→CGG) | ydeP | acid resistance putative oxidoreductase YdeP |
| Reads supporting (aligned to +/- strand): ref base A (16/38); new base C (9/7); total (25/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.46e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CATCCAGCGCCTTTCAGCAGCTGCATTTATCAGGTGAAAACCACCGGGATGACGGATGCGCTGGTTATAGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGCTACGTGTACCGCCAAAT‑CTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGA > NC_007779/1586353‑1586822 | cATCCAGCGCCTTTCAGCAGCTGCATTTATCAGGTGAAAACCACCGGGATGACGGATGCGCTGGTTATAGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATGTCAGCATTACACCGGCGGGTTTTAACACGCCAcgcg < 1:1731234/239‑1 (MQ=255)cATCCAGCGCCTTTCAGCAGCTGCATTTATCAGGTGAAAACCACCGGGATGACGGATGCGCTGGTTATAGTCGCCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAAcacgccacgc < 2:863519/238‑1 (MQ=255)cATCCAGCGCCTGTCAGCAGCTGCATTTATCAGGTGAAATCCACCGGGATGACGGATGCGCTGGTTATAGTCGGCGATCTCTGGCAGCCCAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCCCCAGATACTCCCAGGCTGCCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACCCTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCAAcgcg < 1:1343378/239‑1 (MQ=255) cTGCATTTATCAGGTGAAAACCACCGGGATGACGGATGCGCTGGTTATAGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTCACACGCCCCGCGAGGCATGAATCAT‑AGACAtt > 1:1871279/1‑239 (MQ=255) gCATTTATCAGGTGAAAACCACCGGGATGACGGATGCGCTGGTTATAGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGa < 1:1335988/239‑1 (MQ=255) ttATCAGGTGAAAACCACCGGGATGACGGATGCGCTGGTTATAGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATcc < 1:1880335/239‑1 (MQ=255) aTCAGGTGAAAACCACCGGGATGACGGATGCGCTGGTTATGGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTc < 2:2115685/239‑1 (MQ=255) aTCAGGTGAAAACCACCGGGATGACGGATGCGCTGGTTATAGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTc < 1:1604524/239‑1 (MQ=255) aTCAGGTGAAAACCACCGGGATGACGGATGCGCTGGTTATAGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACACCACGCGAGGCATGAATCAT‑CGACATTGAATCCTc < 2:600311/239‑1 (MQ=255) tCAGGTGAAAACCACCGGGATGACGGATGCGCTGGTTATAGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCa < 1:726992/239‑1 (MQ=255) cAGGTGAAAACCACCGGGATGACGGATGCGCTGGTTATAGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCaa < 1:796365/239‑1 (MQ=255) gTGAAAACCACCGGGATGACGGATGCGCTGGTTATAGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAAAACGCCACGCACGGCATGAAACAT‑CGACATTTACACCTCAACgg > 2:242347/1‑239 (MQ=255) aacccaccGGGATGCCGGTTGCGCTGGTTATGGTCGGCTAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACGCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTAc < 2:1806523/236‑1 (MQ=255) tGACGGATGCGCTGGTTATAGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTTACACCCCACCCGAGGCATGAAACAT‑CCACCTTTAATCCTCCACGGGTACCGCCCgcgccc > 2:1069082/1‑236 (MQ=255) gcgcTGGTTATAGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGGTTTTACACCCCACCCCAGGCATGAATCATACAACATT‑AATCCTCCACGGGTACCCCCCGCGCACCCgtttttt > 2:739446/1‑239 (MQ=255) gcTGGTTATAGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATCCTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACCCTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGtttcttcg < 1:2247410/238‑3 (MQ=255) gcTGGTTATAGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTg < 1:868734/238‑1 (MQ=255) taGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAAt < 1:261750/239‑1 (MQ=255) tCGGCAAACTCTGGCAGCACAGCTTCAATGTCATTGCGGATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCTT‑CGACATTGAATCCTCAACGGTTACCGCCTgcg < 1:2084707/214‑1 (MQ=255) gCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGGTTTAACACCCCCCCCCCGGCATGAATCAT‑CGACCATGAAATCTCAACGGTTTACCCCCGCGCACCCGTTTTTTGCATGTTAAACCCGc > 2:1242253/1‑238 (MQ=255) gggCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTg < 1:2041267/215‑1 (MQ=255) ccaGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACCCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCCCACTCTGATTTCAGCATTACACCGGCGGGTTTTAACCCGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCgg < 1:1464172/238‑1 (MQ=255) acaGCTTCATTGTAATTGCGAATGCTATCATAATCTTCCCCCAGGTACTCCCGGGCTACCCGGCTTTGGGGTAGTGCTGCCTGGGCGTTTCCGGCGGCCACCGCACACTCTGATTTCAGCATTCCACCGGCGGTTTTTAACCCGCCACGCGAGGCATGAATCAT‑CGACATTGCATCCTCAACGTTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCgg < 2:1707964/239‑1 (MQ=255) acaGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGAc < 1:283383/236‑1 (MQ=255) acaGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTAATTTCAGCATTACCCCGGCGGGTTTGAACACGCCCCGCGAGGCATGAATCTT‑CGACATTGAATCCTCACCGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGAc < 1:1069082/236‑1 (MQ=255) acaGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACGCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGTTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGAc < 1:1242253/236‑1 (MQ=255) caGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTTACACGCCACGCGAGGCCTTAATCAT‑CCACCTTGAATCCTCAACGGTTACCGCCCGCGCCCCCGTTTTTTTCTTGTTAAACTCCCCACGTCCCCCGAcccg > 2:474158/1‑236 (MQ=255) cTTCAATGTCATTGCGAATGCGATCATAATCTTCCCCCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGCCCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTAAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCgg < 1:293262/235‑1 (MQ=255) ttCAATGTCATGGGGAATGCGATCTTAATCTGCCCCCAGATCCGCCCAGGCTACCCCGCTCTGGGGTAGTGCGGCCTTCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGaa < 2:1972895/239‑1 (MQ=255) aTGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGGTTTTACACCCCACGCGAGGCGTGAATCAT‑CGACACTGAATCCTCAAAGGTTACCCCCCGCGCACCGTTTTTTTTCATGTCAATATCGCCACCGCCCAGGACCGGCATAAcata > 2:571801/1‑239 (MQ=255) aTGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGGTTTAACACGCCCCGCCAGGCATGAATCAT‑CGACCTTGGATCCTCAACGGTTACCGCCCGGGCACCGTTTTTTTTCATTTCTAACTCCCTCCCCCCCACGACCGGCCGAAaata > 2:2081413/1‑239 (MQ=255) aTTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGCATCCTCAACGGTTACCGCCTCCGCCCCGTTTTTTTTCATTTCAAACTCCCCACGCCCCCGGGCCCGCAGAATATAgtcat > 2:1255147/1‑235 (MQ=255) aTTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGGTTTAACACGCCACCCGCGGGATGAAACAT‑CGAAAATGAATACTCAAAGGGTAACGCCCGCGCACCCTTTTTTTGGCTGTTAAATCCCCCACGTCCCACGGCCGGCAggaaattgccct > 2:293262/1‑228 (MQ=255) cGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGa > 1:2013180/1‑141 (MQ=255) cGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGa < 2:2013180/141‑1 (MQ=255) tGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGTCCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCg < 1:2225939/239‑1 (MQ=255) tGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCCACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCCACGTCCCAGGACCGGCAGAATATTGCTATG‑CCGTGCg > 1:1219907/1‑239 (MQ=255) tGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGGTTTAACACCCCCCCCGAGGCCTGAATCCT‑CCACACTGTATCCCCAACTGGTACCGCCCCCGCCCCGCTTTTTTTCCTGTCAATCTCGCCACATCCCCGGACCGGCCGAATATAGCTCTG‑GCggggg > 2:925509/1‑235 (MQ=255) cGATCATAATCTTCCACCAGATACTCCCAGGCTCCCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGt < 1:571801/239‑1 (MQ=255) aTCTTCCCCCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGCTTCCCGCGCCCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACCCGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGAt < 1:739446/239‑1 (MQ=255) aTCTTCCCCCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGAt < 2:671226/239‑1 (MQ=255) ccaccaGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGGTTTAACACCCCCCGCCAGGCATGAATCAT‑CGACATTTAATCCTCAACGGCTACCCCCCGCGCACCGTTTTTTTGCATGTCAATTTCGCCACGTCCCCGGACCGGCCCAAAATAGATATG‑CCGTGCGGTCAACAGATGagag > 2:869982/1‑239 (MQ=255) ccaGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACTCGCCCCGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCgg < 1:1553020/199‑1 (MQ=255) tACTCCCGGGCTCCCACGCTTTGGGGTGGTGCTGCCTGGGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGtt < 2:1219907/236‑1 (MQ=255) cTCCCAGGCTACCACGATCTGGGGTAGTGGTGCTCGCGCGATTCCCGCGACCACTGCCCGCTCTGATTGCAGCTTTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGGCATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCt < 2:1461514/239‑1 (MQ=255) cccAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTa < 1:869982/239‑1 (MQ=255) ccAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGGTTTTACACGCCACGCGAGGGCTGAATCAT‑CGACACTGAATCCTCCACGGGTACCCCCTGCGCACCGTTTTTTTTCATGTCAATCTCCCCACGTCCCAGGACCCGCAGAATATAGGTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAg > 2:1940803/1‑239 (MQ=255) gCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGGTTTAACACCCCCCGCGAGGCATGAAACAT‑CGACATTTAAACCTCAAACGTTACCGCCCGCGCCCCGGTTTTTTTCATGTCAAACTCGCTACCTCCCCGGACCCGCAGAAAATATCTATG‑CCCTGCGGTCACAAGATTAGAGGGGTTAAGCCTAGTgg > 2:2104532/1‑238 (MQ=255) cTACCACGCCCTGGGGTAGGCCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTCCACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGc < 1:2140713/238‑1 (MQ=255) aCCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGGTTTAACACGCCACCCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCCGCGCACCGTTTTTTTTCATGTCAATCTCCCCACGTCCCCGGACCGGCCGAATATAGCTATG‑CCGTGCGGGCAACAAAAGAAAGCGGGTAAGGTTAAGGGCtc > 2:1002561/1‑237 (MQ=255) gCTCTGGGTTAGTGCTGCCTGCCCGATTCCCGCGACCACGGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCCCGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGCTACGTGTa < 2:746103/239‑1 (MQ=255) gCTCTGGGGTAGTGCTCCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGTTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGCTACGTGTa < 1:242347/239‑1 (MQ=255) gTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTTACACGCCACCCGAGGCATTAATCAT‑CGGACTTGAATCCTCCACGGTTAACCCCCGCGCCCCGGTTTTTTTCATGTCAATATCCCTACCGCCCAGGCCCGGCCGAAAAAAACCATGTCCGCG‑GGTCTACACATGAGAGAGGGTGCGATCAGTGGGCCCGCGTACCCCCACAT‑Ct > 2:1228522/1‑239 (MQ=255) tgcctgcGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGCTACGTGTACCGCCAAAT‑CTAAtt < 1:1255147/239‑1 (MQ=255) tgcctgcGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGCTACGTGTACCGCCAAAT‑CTAAt < 1:1806643/238‑1 (MQ=255) gcctgcGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGGTTTAACACCCCCCGCGCGGGATGAATCAT‑CGACATTGAATCCTCCACGGTTACCGCCTGCGCACCGCTTTTTTTCATGTCAATCTCGCTACGTCCCCGGACCGGCCGAAAATAGCTACT‑CCCTGCGGTCCAAACATGAGAGCGGGTAAGCTTTATGGCTACCTGTACCCCCCAAT‑CTCAtt > 2:393285/1‑238 (MQ=255) gcgATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCCCCCGCGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTTCATGTCAATCTCGCTACGTCCCCGGACCGGCAGAATAAAACTATG‑CCGTGCGGTCCACAGATGAGAGGGGTTAAGCTTAGTGGCCACGTGTACCCCCCAATCCAAATTCCGTTa > 2:1168175/1‑239 (MQ=255) ccgATTCCCGCGCCCCCTGCACCCTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGCTACGTGTACCGCCAAAT‑CTAATTGCGTTaa < 2:961175/238‑1 (MQ=255) cccACTGCACACTCTGATTTCAGCATGCCACCGGCGGGTTTTACCCCGCCCCGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGCTACGTGTACCGCCAAAT‑CTAATTGCGTTAACGGTACAGcgct < 1:2081413/238‑1 (MQ=255) cccctgccaacTCTGATTTCAGCATTACCCCGGCGGTTTTTAACCCGCCCCGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTCCCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGCTACGTGTACCGCCAAAT‑CTAATTGCGTTAACGGTACAGcgctc < 1:2219574/230‑1 (MQ=255) cACTGCACACTCTGATTTCAGCATTACACCGGCGGGGTTTAACACGCCCCGCGCGGCCTGAAACAT‑CGACATTGAATCCTCAACCGTTACCGCCCCCGCACCGTTTTTTTGCATGTGAAACTCGCTACGTCCCAGGACCGGCAGAATATATCTATG‑CCGCGCGGTGAACAGATGGGAGCGGGTAAGCGTAGTGGCTACGTGTTACGCCCAAA‑CTAAATGCGTTTACGGTACAgcgcca > 2:71901/1‑236 (MQ=255) tGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGAt < 1:37367/170‑1 (MQ=255) tGCACACTCTGATTTCAGCATTACACCGGCGGGGTTTAACACCCCACCCGAGGCATGAATCAT‑CGACCTTGAATCCTCCACGGGTACCCCCCGCGCCCCGTTTTTTTGCATGTTAATCCCGCTACGTTCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGGGGGTAAGGTTAGGGGGAACGTGTAACCCCAAAA‑CTAAATGTGTTTACGGGTCAGcgcccgcc > 2:1051959/1‑237 (MQ=255) accctctGATTTCAGCATTACCCCGGCGGGTTTTAACACGCCCCGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGCTACGTGTACCGCCAATT‑CTAATTGCGTTAACGGTACAGCGCTCGCTTcc < 1:2063572/235‑1 (MQ=255) ctctGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGCTACGTGTACCGCCAAAT‑CTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGAt < 1:1002561/239‑1 (MQ=255) ctctGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGACATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGCTACGTGTACCGCCAAAT‑CTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGAt < 1:474158/239‑1 (MQ=255) ctctGATTTCAGCATTACACCGGCGGGGTTTAACACCCCACCCCAGGCATTAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCCGCGCCCCGTTTTTTTTCATGTCAATCTCCCTACGTCCCAGGACCGGCCGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGGTAAGCTTTGTGGCTACGTGTACCCCCCAAA‑CTAAATGCGTTAAAGGTACAACGCTCGCCTccccc > 2:524505/1‑236 (MQ=255) gATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATTAATCAT‑AGACATTGAATACTCAAACGTTACCGCCCGCGCACCGCTTTTTTGCATGTTCATCTCGCCTCGTCCCAGGACCGGCCGGATATAGCCATG‑CCCTGCGGGCAACAGAGGAGAgggggt > 2:37367/1‑168 (MQ=255) gcggGGTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCCACGGGTACCGCCTGCGCACCGCTTTTTTTCATGTCAAATCCCCCACATCCCCGGACCCGCCGAAAATAACTATT‑CCGTGCGGTCCACCGATGAGAGGCGGTAAGCTTAGTGGCTACGTGTCACGCCAAAT‑CCAAATGTGCTTACGGGACATCGCTCGCTCCCCCACCTGGCCTTGCCAACTCaaaact > 2:2017986/1‑237 (MQ=255) cggGTTTTAACACGCCACGTGAGGAATAAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGCTACGTGTACCGCCAAAT‑CTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAAtt < 1:1015978/238‑1 (MQ=255) tttAACCCGCCCCGCGTGGAATGAATCAT‑CGACATTGAATCCTCAACGGTTGCCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGCTACGTGTACCGCCAAAT‑CTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGcccc < 2:194286/238‑1 (MQ=255) gccacgcGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGCTACGTGTACCGCCAAAT‑CTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGa > 1:172079/1‑239 (MQ=255) | CATCCAGCGCCTTTCAGCAGCTGCATTTATCAGGTGAAAACCACCGGGATGACGGATGCGCTGGTTATAGTCGGCGAACTCTGGCAGCACAGCTTCAATGTCATTGCGAATGCGATCATAATCTTCCACCAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCAT‑CGACATTGAATCCTCAACGGTTACCGCCTGCGCACCGTTTTTTTGCATGTCAATCTCGCTACGTCCCAGGACCGGCAGAATATAGCTATG‑CCGTGCGGTCAACAGATGAGAGCGGTTAAGCTTAGTGGCTACGTGTACCGCCAAAT‑CTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGA > NC_007779/1586353‑1586822 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |