| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 2,042,280 | A→G | 24.8% | V222V (GTA→GTG) | msrP → | protein‑methionine‑sulfoxide reductase catalytic subunit MsrP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 2,042,280 | 0 | A | G | 24.8% | 116.1 / 8.1 | 55 | V222V (GTA→GTG) | msrP | protein‑methionine‑sulfoxide reductase catalytic subunit MsrP |
| Reads supporting (aligned to +/- strand): ref base A (25/15); new base G (2/12); total (27/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.11e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTATGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTA‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGTTCAG > NC_007779/2042042‑2042515 | gTATGCGCTGCGTGGAAGCGTGGTCGATGGTGGGGCCGTGGATTGGTTGTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTA‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTa < 2:561662/239‑1 (MQ=255) tATGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGAGTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTA‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAg < 1:1997039/239‑1 (MQ=255) aTGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTA‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAg < 1:1033346/238‑1 (MQ=255) aTGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTA‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAg < 1:991789/238‑1 (MQ=255) aTGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTA‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAg < 1:155902/238‑1 (MQ=255) aTGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCCTA‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAg < 1:952274/238‑1 (MQ=255) gTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGGGGGAAAATACTTT‑TGTTGGAGGAGTGCGTCTCGCCGAAGCCATGCATCCGCCCCCCCTGCTGAGCGTGGGGGGTTATgg > 1:1370458/1‑239 (MQ=255) tGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTA‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAg < 1:182461/228‑1 (MQ=255) ggAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTA‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGc < 1:257170/238‑1 (MQ=255) ggAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTA‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGc < 1:796099/238‑1 (MQ=255) ggggtggtggTGCGGTGGTTTGGTTTTCCGCTGCAAAACTTGCTGGCGCTGCCCGAACCTACCAGCAAGGCGAAGTATGTCGTTTTAGAAACAATTTATGCCCCGGAAAGGATGCCAGGCCAGCAGGCCCGTTTTATGGGCGGTGGGCTGAAATATCTTTA‑TGTCGAGGGTTTGGGTCTCGAGGAAGCAATGCATCCGCCCACACTGATGACCGTAGGTGTTTATGGCAGGGCGTTAc < 2:1501426/234‑1 (MQ=255) gtgCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGGGGGGGGGAAAAAACTTATTTTCGAGAGA‑TGTGGCTCGTAGAGGGAAGGCAAACCGTCCCACTGAGGACCGGAGGGGGTTATTGGAAGGGGGTACCGCCACaaaa > 2:26512/1‑239 (MQ=255) tttCCGCTGCAAAAATTGCTGGCGCTTGCCGACCCCACCAGCAATGGGAAGTATGTCGTTTTCAAAACAATTAATGCACCGGAACAGATGCCGGGCCAGAAGGGCCGTTTTAGCGGCGGTGGGCTAAAATATCTTTA‑TGTCGAAGGATTGCGTCTCGACGAAGAAATGCACCCGCCCACACTGATGCCCGTGGGTTTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCg < 2:1833808/239‑1 (MQ=255) aTTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTA‑TGTCGAAGGATGGCGTCGCGACGAAGCAAGCCACCCGCTCACACTGAGGACCGTGGGTTTTTATGGCAGGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGt < 1:341299/239‑1 (MQ=255) cgcTGGCCGAACCTACCAGCAAGGCGAAGTGTGTCGTTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGTTTTATCGGCGGTGGGCTGAAATATCCTTA‑GGGCGAAGGATTGCGTCTCGACAAAGAAAGGCACCCGCTCACACGGATGACGGTGGGTGTTTAGGGCAGGGGTTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAata < 2:424563/238‑1 (MQ=255) acccccccAGCAATGCGAAGTATGCCGTTTTCGAAACATTTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCTCTTTATCGGCGGTGGGATGAAATATCCTTA‑TGTCGAAGGTTTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGCCCGTAGGTGTTTATGGCAAGGCTTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTaaa < 1:26512/233‑1 (MQ=255) gttgtgtgcttttCAAAAAATTTTATCCCCCGAAACGAGTCCCAGGCCAGCAGGCCCTCTTTACGGGCGGGGGGATAAAATTTCTTTA‑TGTCAAGGGATGGCGTCTGGACGAGGCAATGCACCCGCTCACACGGGTGGCGGTAGTTGTTAAGGGAAGGGTGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGt < 2:1349948/228‑1 (MQ=255) gttATGTGGCTTTCGAAACAATTGATGCCCGGGAACAGAGCCCGGGCCAGGAGGCCCGCTTTATCGGGGGTGGGTTGAAATTTCCTTA‑TGGGGAAGGATTGCGTCTCGACGAAGCAATGCACCCGCTCACAGTGATGCCGGTGGGTGTTTATGGCAAGGCGTTCCCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGt < 2:1662486/236‑1 (MQ=255) ggttggTCGTTTTCGAAACAATTTATGCGCCGAAACATAGGCCTCCCCAGCAGGCCCTCTTTACCGGCGGGGGGCTAAAATACCCTTA‑TGTCGAGGGTTTGCGTTCCGAGGAAGCAATGCACCCGCTCACACTGATGCCGGTTGGTTTTTGTGGCAGGCCTTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGt < 2:540210/233‑1 (MQ=255) agtgtgtaccTTTCGAAACAATTTAGGCCCGGGAACAGATGCCGGGCCAGCAGGACCGCTTGACCGGCGGTGGGATGAATTATCCTTA‑GGTCGAAGGAGTGCGTCTCGACGAAGAAGTGCACCCGCTCACACGGATGACCGTGGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGt < 2:50327/229‑1 (MQ=255) aGTATGTCGTTTTCAAAACAATTTATGCACCGAAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATTTCCTTA‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCACCCGCTCACACTGATGCCCGTGGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGt < 1:222603/238‑1 (MQ=255) aGTAGGGCGCTTTCAAAAAAATTTATGCCCCGGAACGAGTGCCGGGCCGGCGGGCCCTTTTTAGCGGGGGGGGGATAAAATATCCTTA‑TGTGGAGGGTTTGCGTCTCGAAGAAGCAATGCACCCGCTCACACTGGTGCCGGTGGGGGTTTAGGGCAGGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGt < 2:921377/238‑1 (MQ=255) cccGGAAAAGATGCCAGGCCAGCAGGGCCGCTTTACCGGCGGGGGGCTAAAATCTCCTTA‑TGTCGAAGGATTGCGTCTCGACGAAGAAATCCATCCGCTCACACTGAGGCCCGTGGGTTTTTATGGAAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGt < 1:1684820/209‑1 (MQ=255) aCCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTA‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAg < 1:2078889/116‑1 (MQ=255) gtttcgcagccctgCGGGGCCTCTTTGTCGGCGGGGGGCTGAATTATCTTTG‑TGTGGGAGGTTTGCGTCTCGACGAGGCAATCCACCCCCTCACACGGAGGCCGGTGGGTGTTTTGGGAAGGGCTTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAaccacc < 2:569253/233‑1 (MQ=255) aggccagCAGGACCGCTTTATCGGCGGGGGGGGGGAAAATACTTA‑TGTCGAAGGGATGGGTCTCGGCGGAGCAAAGCATCCCCCCCCACCCAAGACCCTGGGTGGTTTTTGGAAGGCGTTTCCGCCCCCAAAAGGGGCGGCCGGGGGGCTGGTTGTGGCGTGGGAAAATGGCCTTAAAGGGGGTAAAAAGAAAAGTATGAATAAGCTGAACCGCGCGGGTCCGCCAACCCCCCGGaaa > 2:1217756/1‑237 (MQ=255) aaaTATCCTTA‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCa > 1:2154032/1‑238 (MQ=255) ccTTA‑TGTCGAAGGATTGCGTCTCGACGAAGAAATGCATCCGCTCACACTGAGGCCGGTAGGTGTTTAGGGCAGGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTa < 2:332914/145‑1 (MQ=255) cTTT‑TGTCGAAGGTTTGCGTCGCGACGAAGCAATGCATCCGCTCACCCTGAGGCCCGTGGGTGTTTATGGCAGGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAAt < 1:1217756/239‑1 (MQ=255) a‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCg > 2:1853211/1‑239 (MQ=255) a‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCg > 1:2253399/1‑239 (MQ=255) a‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGGGCGACTGATTGGGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGACTACGGTTTTTACGCCAACGTTAATCCg > 1:1909897/1‑239 (MQ=255) tGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGt > 1:1465762/1‑239 (MQ=255) gAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGt > 1:1734020/1‑239 (MQ=255) aaGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGt > 1:332914/1‑145 (MQ=255) aaGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAac < 1:74212/178‑1 (MQ=255) aaGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAac > 2:74212/1‑178 (MQ=255) aaGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGtt > 1:1588170/1‑239 (MQ=255) aaGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGtt > 1:2215679/1‑239 (MQ=255) ttGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGa > 1:2030228/1‑181 (MQ=255) ctcGACGAAGAAATGCTCCCCCCCACACTGATGACCGTGGGTTTGTAGGACAGGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCcgc < 1:221563/238‑1 (MQ=255) ctcGACGAAGAAATGCCTCCGCTCACACTGTTGCCGGTAGGTGTTTATGTAAAGGCTTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCcgcg < 1:1469329/239‑1 (MQ=255) cgacgaAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCcgc > 1:1011853/1‑236 (MQ=255) cgacgaAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCcgc > 1:1434696/1‑236 (MQ=255) aGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTcac > 1:204400/1‑239 (MQ=255) cATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTa > 1:1421749/1‑238 (MQ=255) ccGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGa > 2:1082058/1‑239 (MQ=255) gCTCACACTGATGACCGTAGGTGTTTCTGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGAtt > 1:438629/1‑73 (MQ=255) cTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACg > 1:1256497/1‑239 (MQ=255) cacaCTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCAGTGGAAATATg > 1:1264534/1‑86 (MQ=255) cacTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGAttt > 1:1212722/1‑239 (MQ=255) agtgatcgccGTGGTTGTTTATAGCAGGGGGTACCCGCCCCAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTa < 2:1891528/231‑1 (MQ=255) acTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTa > 1:1080229/1‑239 (MQ=255) ccGTAGGGGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGTTCa > 1:2080018/1‑239 (MQ=255) gTAGGTGTTTATGGCAAGGCGTTACCGCCCCAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACTATTTATTGGTTCAg > 1:2264579/1‑238 (MQ=255) gTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGTTCAg > 1:762898/1‑238 (MQ=255) | GTATGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTA‑TGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATGACCGTAGGTGTTTATGGCAAGGCGTTACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGTTCAG > NC_007779/2042042‑2042515 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |