| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 2,153,826 | G→T | 35.5% | intergenic (+43/+22) | Y75_RS10870 → / ← pphC | YegJ family protein/protein‑serine/threonine phosphatase PphC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 2,153,826 | 0 | G | T | 35.5% | 36.7 / 13.2 | 52 | intergenic (+43/+22) | Y75_RS10870/pphC | YegJ family protein/protein‑serine/threonine phosphatase PphC |
| Reads supporting (aligned to +/- strand): ref base G (28/5); new base T (17/2); total (45/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.77e-01 | |||||||||||
CGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACGCTCGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACC > NC_007779/2153624‑2154051 | cGTAGAATTGGGCCAGGGGTGAAAAATAAAGAAAGAAGATATTTCAGCCTGTATGTATCCGGGGGGGGATAAAATTTACGGCGGTTATACCATTGTTCTTTTATTGGTCCCCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCGGCCTTTATATTTTTTTTTTAACCTGGGGGTTG‑AA‑TTTTTGTCTT‑CAACCGCCATGAGaaa < 1:130585/223‑1 (MQ=255) aagaaagggCGAGGAGTGAAAAATAAAAAAAGAAGATATTTCAGAGTGTATGTATACGCGAGGAGAAAAAATTAAGGGCGTTTATCCTATTGATCCTTTATTGGTCACCTTTC‑AAAAAGAAGAACCCGAGGAGCTAAGAGAAAAATTATTTCGCTAACCAGCCTTTATATTTATTGTTTAACCTGGCGTTAA‑AA‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAgcgc < 1:2137023/232‑1 (MQ=255) aaagaaGATATTTCAGGCTGGATGTATCCGCGCGGGGAAAAAATTTACGGCGGTTATACCATTGATCTTTTTTTGTTCACCTATC‑AAAAAGAAGATGCCGACAAGCTAAGAGAAAAATTAGTTCGCTAATCACCCTTTATTTTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTATCATCATCCGT‑a < 1:159983/239‑1 (MQ=255) ggggggaaaaaaaTTTAGGCGGGTTATACAATTATTCTTTTATGGGCCCCCTTAC‑AAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTGTTCCGCTACTCACCCTTTATATTTTTTGTTAAACCGGGGGGTTA‑AT‑TTGTTTTCTC‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACGCTCGTTTACCG‑CCGGGCTGGACaaaaa < 1:531132/229‑1 (MQ=255) taacATTTATTCTTTATTTGTCCCCCAACAAAAAAGAGGAAGCCGACGAGGTAAAAGAAAATTTATTCCGCTAACCAGCCTTTATATTTTTTGTTTAATCTGGGGTTAT‑AT‑TTGTTGTCTC‑CACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACGCTCGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAt < 2:547689/236‑1 (MQ=255) ttGATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTTTTTT‑CTAACGCCATGAGAAAAACACTCTGCCCCCACCGCCAG‑TGCCCAAGGTTTTTTATCATCCCT‑ACACCCCTTTTCCC‑CCGGGGTGGACAAAAAATGCTTTAAAAATTCAGGGAATAAAACGAgat > 2:938419/1‑237 (MQ=255) tGATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑TA‑TTTTTTTTTT‑CTACCGCCATGAGAAACTAACTCTGCCCCCAGCGCCCG‑TGCCAACGTTTTTTCATCCTCCGT‑ACGCTCGTTTTCCC‑CCCGGCTGGACAAAAACTGCCTTAACAAATCAGGTAATAAAAAGAgttt > 2:758397/1‑238 (MQ=255) tGATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑TA‑TTGTTGTGTT‑TCACCGCCATGAGAAACACACTCTGCCCACAACGCCAG‑TGCCAACGTTTTATCAACATCCGC‑ACGCCCGCTTACCC‑CCGGGCTGGGCAAAAACTGCCTTAACAATTCAGGGAATAAAACGAgttg > 2:1172058/1‑239 (MQ=255) tGATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTTTT‑CAAACGCCATGAGAAAACTACTCTGCCCCCCACGCCAG‑GGCCAACGTTTTATCATCATCCCG‑ACGCTCCTTTACCG‑CCGGGCTGGACAAAAAAAGCTTTAAAAATTCAGGTAATAAATCGAgttg > 1:1136853/1‑239 (MQ=255) tGATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑TTACCCCCCTGAGAAAATCACTCTTCCCCCAACGCCCG‑t > 1:1176406/1‑153 (MQ=255) tGATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAAACGCCATGAGAAAATCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACGCTCGTTTACCG‑CCCGGCTGGACAAAAACTGCTTTTACAATTCAGGGAAAAAATCGAgttg > 1:2235692/1‑239 (MQ=255) tGATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGATG‑AA‑ATTTTTTCTT‑CAACCGCCCTGAGAAACTCACTCTTCCCCCAACGCCCG‑TGCCAAAGGTTTATTATCATCCGG‑ACGCTCGTTTACCG‑CCCGGCTGGACAAAAACCGCTTTTAAAAATCAAGGAATAAAACGAgttg > 1:2126171/1‑239 (MQ=255) gATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTTTTTTTTT‑CTACCCCCCTGAGAAAAACACTCTGCCCACAACGCCAG‑TGCCAACCTTTTATCATAATCCCT‑ACCCTCGTTTACCC‑CCGGGCCGGGCAAAAAATGCTTTAACAATTTAGGGAAATAATACAgttgt > 2:1326149/1‑239 (MQ=255) gATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTTTTTT‑CAAACCCCATTAGAAAATCACTCTGCCCACAACGCCAG‑GGCCCACGTTTTATCATCATCCGT‑ACGCTCGTTTTACC‑CCGGGCCGGACAAAAAATGCTTTTACAATTCATGGAATAAATCTAgtttt > 2:877366/1‑237 (MQ=255) gATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCCACGTTTTATCATCATCCGT‑ACGCTCGTTTACCG‑CCGGGCTGGACAAAAAATGCTTTAACAATTCAGGTAATAAATCGAgttgt > 1:1399583/1‑239 (MQ=255) gATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGGTT‑TA‑TTGTTTTCTT‑TCACCGCCCTGAAAAAACCACTCCTCCCCCCACGCCAGTTGCCACCGTTTT‑TTATCATTCGTAACCCCCTTTTACC‑‑CCCGGCCGGACCAAAACTGCTTTTACAATTCAGGGTATaaaacccggtgt > 2:1160756/1‑230 (MQ=255) gATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGAGG‑AT‑TTTTTGTCTT‑CAAACCCCCTGAGAAAATCACTCTGCCCACACCGCCCG‑TGCCCACGTTTTATCATCATCCGT‑ACCCCCGCTTTACG‑CCGGGCGCGAAACAAACGTCTTTAACAAATCAGGTAATAAAACGAgtttt > 2:1239981/1‑237 (MQ=255) aTCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTTTTTT‑CTAACCCCCTTAGAAAATAACTCTTCCCACAGCGCCCG‑TGCCCACGTTTTATTATACTCCGT‑ATGCTCGTTTACCC‑CCGGGCGGGGCAAAAAATGCTTTTAAAATTTAGGTAATAAATCAAggtgtt > 2:52126/1‑239 (MQ=255) ccTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTT‑AA‑TTTTTTTTTT‑CAAACGCCATGAGGAAATCACTCTGCCCACAACCCCAG‑TGCCCAAGCTTTATCATCATCCCG‑ACCCTCCGTTACCG‑CCCGGCTGGACAAAAACAGCTTTAACAATTCAGGTAAAAAAAAGAgtgttt > 2:1566781/1‑233 (MQ=255) ccTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAACCGCCCTGAGAAACTCACTCTGCCCCCAGCGCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACGCTCGTTTACCG‑CCCGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAgttgtt > 1:2029391/1‑237 (MQ=255) ttATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTTTTTT‑TAAACCCCATGAAAAAATCACTCTTCCCACAACGCCCG‑TGCCAACGTTTTTTCATCATCCGC‑ACGCTCCTTTACCC‑CCCGGCTGGACCAAAACTGCTTTATCAATTCAGGGAATAAATCTAGTTGTTTCTGc > 2:1498983/1‑239 (MQ=255) ttATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTatc > 1:905396/1‑160 (MQ=255) ttATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGGTG‑AA‑ATGTTGTCTT‑CAACCCCCATGAGAAAATCACTCTGCCCACAGCGCCAG‑TGCCAACGGTTTATCATCAGACGT‑ACGCTCGTTTACCG‑CCGGGCTGGACAAAAAATGCTTTAAAAATTTTGGTAATAAAACGAGTTGTTCCtcc > 1:2221002/1‑237 (MQ=255) tATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAACCGCCATGAGAAAATTACTCTTCCCCCAACGCCAG‑TGCCAACGGTTTATCATCATCCGG‑ACGCCCGTTTACCC‑CCGGGCTGGACAAAAAATGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCg > 1:1109582/1‑239 (MQ=255) aTTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCCAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAAA‑TTTTTTTTTT‑CAA‑CGCCCTTAGAAAAACACCCCTCCCCCAACGCCCG‑TGCCCACGTTTTTTTATCATCCCT‑ACCCCACTTTACCG‑CCGGGCTGGACCAAAACTGTTTTAACAAATACGGTTATAAAACGAGGTGTTTCTGcct > 2:649597/1‑237 (MQ=255) aCCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTTTTTT‑CAACCGCCCTTAGAAACTCACTCTGCCCACACCCCCAG‑TGCCCACCGTTTTTTATCCTCCCT‑CCGCCCGTTTTCCA‑CCCGGGCGGGCAAAAACTGCCTTTAAAATTTACGTAATAAAACAAGTTGTTTCTGCgcttctct > 2:1140022/1‑231 (MQ=255) cTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑GA‑TTGTTGTCTT‑TAACCGGCATGAGAAAATCACTCTGCCCCAAGCGCCAG‑TGTCCACGTTTTTTCATTATACGT‑AAGACCGGTTAACG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGGAATAAATCGGAGTGTTCCTGCGtttgtgaca > 1:2016962/1‑231 (MQ=255) ataccaaaaaGAAGAGCCGGACGAAAAAAGACAAAATTTTTTTCGCTAA‑CCGCCGTTTTTTTTTATTTTTAAACTGGGGGGTT‑AA‑TTTTTTTTTTCCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACGCTCGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTgccgc < 1:1326149/233‑1 (MQ=255) aagaagaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTTTCTT‑CAACCGCCATGAGAAAATCACTCTGCCCACAGAGCCAG‑TGCCCACGTTTTATCATCATCCGT‑ACGCTCGTTTACCC‑CCGGGCCGGACAAAAAATGCTTTAAAAATTCAGGGAATAAATCGAGTTTTTTCTGCGTTGCTGCCGCCAGTCCAt > 1:1956707/1‑239 (MQ=255) aagaagaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAACCGCCCTGAGAAACTCACTCTGCCCACAACGCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACGCTCGTTTTCCG‑CCGGGCTGGGCAAAAACTGCTTTAACAATTCAGGGAATAAAACCAGTTGTTCCTGc > 1:914922/1‑220 (MQ=255) aagaagaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCCG‑GGCCAACGTTTTATCATCATCCGG‑ACGCCCGTTTACCC‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGc > 1:229266/1‑220 (MQ=255) aagaagaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAAACGCCATGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTTTCATCATCCGT‑ACGCCCGTTTACCG‑CCGGGCTGGGCAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCAt > 1:1185434/1‑239 (MQ=255) gaagaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACCGCGCCAG‑TGCCAACGTTTTTTCATCATCCGT‑ACGCCCGCTTTCCG‑CCGGGCTGGACaaaaa > 1:327823/1‑178 (MQ=255) gaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTTTCTT‑CAACCGCCCATAGGAAATAACTCCGCCCACAAGGCCAG‑TGGCAACCATTTATTCTCAATCCT‑ACGCTGCGTTACCC‑CCGGGCTGGACCAAAACTGCTTTAAAAATTCAGGGAATAAATTCAGTTTTTCCCTCCTTTCCTCCGCCCATCCATTGaaa > 2:445081/1‑239 (MQ=255) gaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTTTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACGCTCGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTTaaa > 1:777568/1‑239 (MQ=255) gaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTTTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCAACGCTTTATCATCATCCGT‑ACCCTCGGTTACCG‑CCGGGCTGGACAAAAACTGCTTTTACAATTCAGGTAATAAATCGAGGTGTTCCTGCGTTGCTGCCGCCCGTCCATTGaaa > 1:994377/1‑239 (MQ=255) gaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAACCGCCATGAGAAAATCACTCTGCCCACAGCGCCCG‑GGGCAACGGTTTATTATCATCCGG‑AAGCTCGTTTAccg > 1:446519/1‑159 (MQ=255) acccGACGAACTAAAAAAAAAATTATTTTGCTATTCAGCCTTTATTTTTTTTG‑TTAAACCGGGGGTTT‑AATTTGTTGTCTC‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACGCTCGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGaaaaa < 1:758397/237‑1 (MQ=255) gCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTTTT‑CAACCCCCCTGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACCCTCCTTTACCG‑CCCGGCTGGACCAAAAATGCTTTAACAATTCCGGTAATAAATCGCGTTGTTCCTGCGTTGCTGCCCCCAGTCCCTTGaaaaa > 1:1381412/1‑230 (MQ=255) aaaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAAACGCCCTGAGAAACTCACTCTTCCCCCAGCGCCAG‑TGCCAACGTTTTATTATCATCCCT‑ACGCCCGTTTACCGCCCGGGCGGGCAAAAAATTCCTTTAA‑AATTCAGGTAATAAATCGAGGTGTTCCTGCGTTGCTGCCCCCAGTCCATTGAAAAAAGGGGGAAAGAAAAGccca > 2:364911/1‑239 (MQ=255) gTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTTTT‑CAACCGCCCTGATAAAATCAACCTGCCCACAACGCCAG‑TGCCAAAGTTTTTTTATCATCCCT‑ACGCTCGTTTACCG‑CCGGGCCGGGCAAAAACTGCTTTAAAAATTCCGGTAATAAAAAGAGTTGTTCCCGCGTTTCTCCCGCCAGTCCCTTGAAAAAAAGGGTAAAAAAAAGGCCATgagga > 2:2207556/1‑239 (MQ=255) gTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAAACGCCATGAGAAAATCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACGCTCGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTaaaga > 1:66664/1‑225 (MQ=255) cTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTTTCTT‑CAAACGCCATGAGAAAATCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTTTCATCATCCGT‑ACGCTCGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGGTGTTCCCTCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGGAAATGAGGAGAAtt > 1:1201707/1‑239 (MQ=255) tGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑TAACCGCCCTGAGAAAATCACTCTGCACACAGCGCCAG‑TGCCCACGGTTTATCATCATCCGT‑AAGCTCCTTTTCCG‑CCGGGCTGGACAAAAACTTCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGATGACGCCAGTCCATTGAAAAAAGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCAAATTTAACGCCac > 1:1989045/1‑238 (MQ=255) gTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACGCTCGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTTACAATTCAGGGAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTg > 1:148531/1‑182 (MQ=255) ttAAACTGGCGGTTT‑AA‑TTGTTGTCTT‑CAAACGCCCTGAGAAAATCACTCTTCCCACAGCGCCAG‑TGCCCACGTTTTATCATCATCCGT‑ACGCTCGTTTTCCG‑CCGGGCTGGGCCAAAACTTCTTTTACAAATCAGGTAATAAATCGAGGTGTTCCCGCGTTTCTGCCCCCAGTCCCTTTCAAAAAGGGGGAAAAAAAGGCACATGAGGAGAATTATCCAGTATATTTAACGACAATc > 1:623522/1‑238 (MQ=255) ttAAACTGGCGGTTG‑AA‑ATGGTGTCTT‑CAAACGCCCTGAGAAAATCACTCTGCCCCCAGCCCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACGCTCGTTTACCC‑CCCGGCTGGACAAAAACTGCTTTAACAATTCAg > 1:1687455/1‑136 (MQ=255) tAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAAACGCCATGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCCACGTTTTATCATCATCCGT‑ACGCTCGTTTACCG‑CCCGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGGTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAAAGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTc > 1:779717/1‑237 (MQ=255) aCTGGCGGTTG‑AA‑TTGTTGTCTT‑CAACCGCCATGAGAAAATCACTCTGCCCACAGCGCCAG‑TGCCAACGGTTTATTATCATCCGT‑ACGCCCGTTTACCG‑CCCGGCTGGGCCAAAAATGCTTTTACAATTCAGGGAATAAAACGAGTTGTTCCTTCGTTTCTGCCGCCCGTCCATTGAAAAAAGGGGGAAAGAAAGGCACAAGAGGAGAAATATACAGAATAATTAACGCCAATCGCCgg > 2:844129/1‑239 (MQ=255) aCTGGCGGTTG‑AA‑ATGTTTTCTT‑CAACCGCCATGAGAAAATCACTCCGCCCACAAAGCCAG‑GGCCCACGCTTTATCATCATCCGT‑ACGCCCGTTTACCG‑CCCGGGTGGACAAAAAATTCCTTAAAAATTCAGGGCATAAATACGGGTGTTCCTGCGTTGCTGCCGCCAGTCCATTAAAAAACACGGGGAAAAAAGGCACATGAGGAGAATTATACCGCATAATTAACGCCaaacgccgg > 2:1761675/1‑231 (MQ=255) cGGTTG‑AA‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACGCTCGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATAcc > 1:829972/1‑239 (MQ=255) cGGGTG‑AA‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGGCCACAGCGCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACGCTCGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGGAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTTCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATAc > 1:55500/1‑238 (MQ=255) gtCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAg > 1:1443039/1‑37 (MQ=255) | CGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG‑AA‑TTGTTGTCTT‑CAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAG‑TGCCAACGTTTTATCATCATCCGT‑ACGCTCGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACC > NC_007779/2153624‑2154051 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |