New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	1097383 =	109 (0.670)	9 (0.060)	4/418	NT	11.2%	intergenic (+132/+242)	Y75_RS05375/Y75_RS05385	hypothetical protein/RtT sRNA
	?	NC_007779	1097819 =	35 (0.220)					noncoding (75/88 nt)	Y75_RS05390	tRNA‑Ser

AAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTA  >  NC_007779/1097588‑1098056                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                 aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCg                                                                                                                                                                                                                                           <  1:470849/239‑1 (MQ=33)  aaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGa                                                                                                                                                                                                                                          <  1:1323155/239‑1 (MQ=33)  aaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGa                                                                                                                                                                                                                                          <  1:1426931/239‑1 (MQ=33)   aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGaa                                                                                                                                                                                                                                         <  1:798016/239‑1 (MQ=34)              ttCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACg                                                                                                                                                                                                                              <  1:329415/239‑1 (MQ=40)                   aCGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCGCTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTGCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGc                                                                                                                                                                                                                          <  1:1566345/238‑1 (MQ=255)                   aCGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGc                                                                                                                                                                                                                          <  1:272560/238‑1 (MQ=255)                   aCGAGCTCTTCGTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGc                                                                                                                                                                                                                          <  1:1542217/238‑1 (MQ=255)                         tcttctTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGAttgactcgc                                                                                                                                                                                                                                      <  1:1578768/220‑8 (MQ=11)                          cttcttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATaca                                                                                                                                                                                                                  <  1:1026486/239‑1 (MQ=255)                            tcttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATacaca                                                                                                                                                                                                                <  1:437246/239‑1 (MQ=255)                            tcttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATacaca                                                                                                                                                                                                                <  1:1482102/239‑1 (MQ=255)                                          ggTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTg                                                                                                                                                                                                   <  1:1556977/238‑1 (MQ=255)                                          ggTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTg                                                                                                                                                                                                   <  1:1595362/238‑1 (MQ=255)                                          ggTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTg                                                                                                                                                                                                   <  1:105687/238‑1 (MQ=255)                                                           cTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTCTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACTCTTTCCAGGCGTGCTCCTTCAGCCACTCGGa                                                                                                                                                                                 <  1:151676/239‑1 (MQ=255)                                                            tcgcttcgctCGCCGTGCGGGCAGCCCGCTCTATGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCGGGTCGGGGCTTCTCATCCCCCCGGTGGGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATAAGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGac                                                                                                                                                                                <  1:866602/239‑1 (MQ=255)                                                             cgcttcgctCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGaca                                                                                                                                                                               <  1:1173712/239‑1 (MQ=255)                                                                                                gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAAc                                                                                                                                             <  1:458589/238‑1 (MQ=255)                                                                                                    aCGGTCTGTCCAACTGGCTGTCGCCAGGTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGgcg                                                                                                                                        <  1:1541421/239‑1 (MQ=255)                                                                                                              cAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAgg                                                                                                                             <  1:1640732/239‑1 (MQ=255)                                                                                                               aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAggg                                                                                                                            <  1:1722698/239‑1 (MQ=255)                                                                                                               aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAggg                                                                                                                            <  1:107458/239‑1 (MQ=255)                                                                                                                 cTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGaa                                                                                                                          <  1:298103/239‑1 (MQ=255)                                                                                                                   cagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccgggGggatgag                                                                                                                                                                                                                                           >  1:1089819‑M2/119‑123 (MQ=255)                                                                                                                      tGTCGCCAGTTGGCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTTAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCAt                                                                                                                     <  1:397072/239‑1 (MQ=255)                                                                                                                                                           ccccccGGTGTGTGTAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTCCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATcgcgcg                                                                              <  1:1348275/239‑1 (MQ=255)                                                                                                                                                                       tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGG‑GGGGGGGGGTCGAACCCCCCCTACGTTGCCGTATACACACTTTCCAGGCGGGCTCCTTCAGCCCCCCCGACACCTCCCCAAATTTTCGTTCCTGTCTTTCTTGGACGGGCG‑CCAATTTTGGGGAATCATGACCTGAGGTCAACAAAAC‑TTTTTTAAAAAA‑CGCGCGGTTATTCAAACt                                                                  >  1:446430/1‑239 (MQ=18)                                                                                                                                                                       tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCt                                                                                                                                                                            <  1:1339393/136‑1 (MQ=255)                                                                                                                                                                        gCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACtt                                                                 <  1:1003051/239‑1 (MQ=255)                                                                                                                                                                           atatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccgggGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTtca                                                               >  1:454600‑M2/63‑239 (MQ=255)                                                                                                                                                                            tatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccgggGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCa                                                                                                                                                                          <  1:671292‑M2/73‑1 (MQ=255)                                                                                                                                                                            tatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccgggGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCa                                                                                                                                                                          >  2:671292‑M2/62‑134 (MQ=255)                                                                                                                                                                            tatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccgggGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTtcaa                                                              >  2:1309971‑M2/62‑239 (MQ=255)                                                                                                                                                                            tatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccgggGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTtcaa                                                              >  1:1643025‑M2/62‑239 (MQ=255)                                                                                                                                                                            tatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccgggGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTtcaa                                                              >  1:457102‑M2/62‑239 (MQ=255)                                                                                                                                                                            tatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccgggGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTtcaa                                                              >  1:274517‑M2/62‑239 (MQ=255)                                                                                                                                                                            tatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccgggGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTtcaa                                                              >  1:1739477‑M2/62‑239 (MQ=255)                                                                                                                                                                            tataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGAACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTtcaat                                                             <  1:1326789/239‑1 (MQ=255)                                                                                                                                                                              taCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTtcaatca                                                           <  1:104535/239‑1 (MQ=255)                                                                                                                                                                               aCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGTTTGAACCCCCCCTACCTTTCCGTATAAACACCTTCCCCGCGGGCCCCCTCCCCCACCCCGCCACCCCCCCACACTTTTGTTCCTGTCTTTCTTGTAACGGCG‑CTCCTTTTGGGAAATAAAGAACCTAGGTGAAC‑AAACTTTTTTGAAAAAAAC‑CGCGTTTATTTCAACTtcaactaa                                                          >  2:1805364/1‑235 (MQ=9)                                                                                                                                                                                      aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGAGAGGGGGGGGTTTTGAACCCCC‑CCACCTTTCCGTATACACACCTTTCCGGGGTGCTCCCTCCCCCCCCCCGGCCCCCCCCCAAAATTTCCTTTCTGTCTTTCTGGGACGGGCGCCAAATTTAGGGAAA‑CATTACCTTAGGGCCAC‑AAAA‑ATTTTTAAAAAAACGAGCGGTTATTCAAAATtcaattaaaaattgt                                                   >  2:942687/1‑232 (MQ=255)                                                                                                                                                                                                         gggcttttttttcgtatattgcacacaccgggGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCt                                 <  2:1739477‑M2/207‑1 (MQ=255)                                                                                                                                                                                                                            ggCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCa             <  1:396608/239‑1 (MQ=255)                                                                                                                                                                                                                            ggCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCa             <  1:157341/239‑1 (MQ=255)                                                                                                                                                                                                                                   accgggGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGAtt       <  1:1309971‑M2/233‑1 (MQ=255)                                                                                                                                                                                                                                   accgggGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGAtt       <  2:454600‑M2/233‑1 (MQ=255)                                                                                                                                                                                                                                         gggATTCGAACCCCCGATACGTTGTCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTa  <  1:1445916/238‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                 AAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCG‑CTAATTTAGGGAAATCATGACCTGAGGTCAAC‑AAAC‑TTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTA  >  NC_007779/1097588‑1098056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.