| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 2,042,280 | A→G | 20.8% | V222V (GTA→GTG) | msrP → | protein‑methionine‑sulfoxide reductase catalytic subunit MsrP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 2,042,280 | 0 | A | G | 20.8% | 146.2 / 6.5 | 75 | V222V (GTA→GTG) | msrP | protein‑methionine‑sulfoxide reductase catalytic subunit MsrP |
| Reads supporting (aligned to +/- strand): ref base A (36/22); new base G (3/14); total (39/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.90e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.32e-01 | |||||||||||
TATGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGTTCAGGCG > NC_007779/2042043‑2042518 | tATGCGCTGGGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGATGCACGAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGTCGGTGGGCTGAAATATCCTTATGTCGTAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAg < 2:420054/239‑1 (MQ=255) aTGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAg < 1:1004918/238‑1 (MQ=255) aTGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAg < 1:511690/238‑1 (MQ=255) aTGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAg < 1:91056/238‑1 (MQ=255) tGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGGGGGAATATCCCTTTGTCCGAGGGATGCGTCTCGACGAAGCAAAGCATCCCCCCCCACCGATG‑TACGTAggg > 1:1651497/1‑238 (MQ=255) gCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGGGGGCATATTCTCATGTCGACAGAATGCGTCGCGCCGCAGCAATACATGCGCCCCCACCCACG‑ACCGTAggaagttat > 2:595370/1‑232 (MQ=255) gCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGCGGCGAAATCCTTATGTTGCAGGGATGCGTCTCGCCGCGGCCATACAACCTCTCCACCTGCTG‑ACAGCAGGGG‑ttttt > 2:985204/1‑237 (MQ=255) tGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGCGGGCGGAAAAATCCTTATGTCGAAGGATTGTGTCTCGACGAAGCAATGAATCCGCTCACACTGATG‑ACCGCAGGGG‑GTTAttgt > 1:509051/1‑236 (MQ=255) tgCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGCTGGAATATCCTTTTGTCGAAGGGTTGCGTCTCGACGAAACAAAGCATACGCCCACACTGATA‑ACCCTGGGGG‑TTTATTGTAAAGGGTG‑ACCGCCCCaaaaa > 1:94530/1‑238 (MQ=255) ccGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGGGGGAATATCATTTTTTTGAAGGAGTAGGTCTCGGCGCGGCAAAACAACCCCCCACACTTATG‑TGCGTGGGGG‑TTTTTGGGGTGGGGTG‑ACCCCCCCaaaaaag > 2:698092/1‑236 (MQ=255) gATTGGTTTTCCGCTGAAAAAATTGCTGGCTCTGGCCGACCCTACCAGCAAGGCGAAGTATGTCGCTTTCGAAAAAATTTATCCCCCGAAACAGATCCCAGGCCAGCAGGCCCGTTTTAT‑GGGGGGGGGGCTAAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑CCCGTGGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGgcgcg < 1:985204/238‑1 (MQ=255) tGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGGTGAAATAACCTTATGTCGCAGGATTGCGGCTCGGCGAAGCAAAGCAACCCCCCACCCCGATG‑ACCGGAGGTGTTTTTTGGAAAGGGGTA‑ACCCCCACaaaaagcgggcccg > 1:1837326/1‑229 (MQ=255) gTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGCTGTAATATCCTTATTTCTAAGGATTGCGTCTCGACGAAGAAATGCATCCCCCCCCACTGATG‑ACCGGAGGGG‑GTTTTTGCAAGGAGTT‑ACCCCCACAAAAAGGCGCGcccggg > 1:1159039/1‑235 (MQ=255) cacaAATGGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCCCCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGAAAGGCGTT‑ACCGCCACAAAATGgcgcgc < 1:573325/223‑1 (MQ=255) acaAATTGCTGGCGCTTGCCGAACCTCCCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATtgtg < 1:1430350/239‑1 (MQ=255) caAATTGCGGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCTCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCAAGCAGGACCGCTTTAT‑CGGGGGTGGGATGAAATTTCCTTATGTCGAAGTATTGCTTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTT‑TTTATGGCAGGGCTTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGc < 1:978690/239‑1 (MQ=255) aaTTGCGGGCGCTTGCCGACCCTCCCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCCCCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGAAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCg < 1:28963/239‑1 (MQ=255) cgcTTGCCGACCCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCGGGCCAGCAGGACCGTTTTAT‑GGGGGGTGGGCTGAAATTTCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAGGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAata < 1:865032/238‑1 (MQ=255) aaaCCTACCAGAAGTGCGAGGTATTTCGATTGAAAAAAAATTTATGCCCCGGAACAGTGCCCAGGCCGGCAGGCCCTTTTTTT‑CGGGGGGGGGCAAAAATATCTTTAGTTGGAGGGTTTGCGTCTCGAGAAAACATTCCACCCGCTCCCACGGATG‑ACGGGGGTGG‑TTTAGGGAAGGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTaa < 2:1159039/238‑1 (MQ=255) tGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGGGGGGGGGAAAAATCTTATGTGCAAGGAGTGTGTCTCGACGCAACAAAGCATCCCCCCCCCCTGCTGTACCG‑AGGGG‑TTTTTTGCAAAGCGTTAACCCCCCCAAAAAGGGCCCCCGGGGGGGTGCATTGTGCCGGTGAAATATGCGTTTAAAGGAATaaaaaaa > 2:1249402/1‑236 (MQ=255) tGCAAAGTATGTCTCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGCTGAAATATCCTTATGTGGAAGGATTGCGTCTCGACGAAGCAATGCCTCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCTTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGa < 1:176578/239‑1 (MQ=255) aGTGTGTCGTTTTCAAAACATTTTATGCACGGGAACAGATGCAAGGCCAGCGGGCCCGTTTTAT‑CGGCGGTGGGCTGAAATTTCCTTATGTCGAGGGATGGCGTCTCGACGAAGCAATGCATCCGCTCACACGGATG‑ACCGTGGGTG‑TTTAGGGCAGGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTc < 2:1291764/239‑1 (MQ=255) aGTATGTCGTTTTCGAAACAATTTAGGCCCCGGAACAGATGCCAGGCCAGCAGCACCGTTTTAT‑GGGGGGTGGGCTGAAATATCCTTATGTCGAAGGATGGCGTCTCGAAGAAGAAATGCATCCGCCCACACTGATG‑ACGGTGGGTG‑TTTATGGAAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGt < 2:401405/238‑1 (MQ=255) aGTATGTCGCTTTCGAAACATTTTATGCACGGGAACAGATGCCAGGCCAGCAGGACCGTTTTAT‑CGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAGGGCTTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGt < 1:306796/238‑1 (MQ=255) aGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGGTGGAAAAATCTTTTTTCGAAGGATTGCGTCTCGGCGGAGCAAAGCATACCCCCCCACCGATT‑ACCATGGGGG‑GTTTTGGGAAGGCGGT‑ACCGCCCCCAAAAGGCGCGCCGGCGGGGCGGATTGTGTCGTGGGAAAAAGGGTTTTAAGGGATGAAATATATAgac > 2:1431817/1‑237 (MQ=255) aGTATGTCGCTTTCAAAACAATTTATGCCCCGGAACAGATGCCAGGCCAGCAGGACCGTTTTAT‑GGGCGGTGGGTTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑CCCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGt < 1:488418/238‑1 (MQ=255) aGTATGTCCCTTTCGAAACAATTTATGCACCGGAACAGATCCCGGGCCAGCAGGACCGTTTTAT‑CGGGGGGGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCGCGACGAAGAAATCCATCCGCTCACACTGATG‑CCCGTAGGTG‑TTTATGGCAGGGCTTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGt < 1:106238/238‑1 (MQ=255) ggTCGCTTTCGAAAAAATTTATGCCCCGGAACAGATGCCGGGCCAGAAGGACCGCTTTAT‑CGGCGGGGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCCCACACTGATG‑ACCGTAGGTT‑TTTATGGCAGGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTa < 1:698092/238‑1 (MQ=255) aCCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGGGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTAGGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGt < 1:1775236/210‑1 (MQ=255) ggaggccaggccagAAGGACCGTTTTAT‑CGGGGGTGGGCTAAAATATCCTTATGTCAAAGGATGGCGTCCCGACGAAGCAATGCACCCGCCCACACTGATG‑ACGGTGGGTT‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAaccacc < 2:1413475/235‑1 (MQ=255) aggtGCCAGGCCCGCAGGA‑CGCTTTGTGCGGGGGGGGGATGAATTTTCTTTAAGTGGAAGGATGCGGCCTGGAGGAGGAAATGCATCCCCCAACACTGCGG‑ACGGTAGGTG‑TTTAGGGCGGGGGTTT‑GCCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAaccacc < 2:634611/236‑1 (MQ=255) tGCCAGGCCAGCAGGACCGCTTTAT‑CGGGGGGGGGCTAAAATATCTTTATGTCGAAGGATTGCGTCTCGACGAAGAAATGCATCCGCTCACACTGATG‑ACCGTGGGTG‑TTTAGGGAAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAaccacc < 1:153267/236‑1 (MQ=255) ccagCAGGCCCGTTTTAG‑GGGGGATGGGTTAAAATCTCTTTAGTTCGAAGGATTGCGTCTAGAGGAAGAAATGCCCCCGCTCACACGGAGG‑CCGGGGGTTG‑TTTGTGGAAAGGGGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTgg < 2:1558964/239‑1 (MQ=255) atggggggTGGGTTAAAATTTCCTTATGTCGAAGGATGGCGTCTCGACGAAGCAATGCATCCGCTCACCCTGAGG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATa < 1:113523/233‑1 (MQ=255) cacaggggttaaaaTTTCCTTATGTCGAAGGATGGCTTCCCGAGAACACGATCCCTCCCCCCACGCTGATA‑GCCGTGGGTT‑TTTGGGGAAGGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACg < 2:267779/226‑1 (MQ=255) tGGGCTAAAATATCTTTATGTCGAAGGATTGCGTCTCGACGAAGCAAGGCATCCGCTCACACTGATG‑ACCGTAGGTT‑TTTATGGCAGGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGtttt < 1:632373/238‑1 (MQ=255) tGGGCTAAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTT‑TTTATGGAAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGtttt < 1:1337846/238‑1 (MQ=255) ggCTAAAATATCTTTATGGGGAGGGATGGCGTCGGGACGAGGAAATGCCCCCGCTCCCACTGATG‑CCCGTAGGTT‑TTTAGGCAAAGGCGTG‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAata < 2:1825798/139‑1 (MQ=255) aggAAATATCCTTATGTCGAAGGATTGCGTTCCGACGAAGCAATGCATCCGCTCCCCCTGAGG‑ACGGTGGGTG‑TTTATGGCAGGGCTTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGc < 1:1090934/237‑1 (MQ=255) aaaTATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGCGCGGCCGCCAACCCCCTGGAATCTGGCAGCGCCTGACGAAAACGGTTTTTACCCCa > 2:1398775/1‑238 (MQ=255) atCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCACCCGCTCACACTGATG‑ACCGTGGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGtt < 1:457478/239‑1 (MQ=255) tCCTTATGTCGAATGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑CCCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTa > 2:1138884/1‑239 (MQ=255) tCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTaaa > 1:1825798/1‑139 (MQ=255) tCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGc > 1:267779/1‑231 (MQ=255) tCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTa > 1:320775/1‑239 (MQ=255) tCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTa > 1:630354/1‑239 (MQ=255) tCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTa > 2:1670357/1‑239 (MQ=255) tCCTTATGTCGAAGGATTGCGTATCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAGAATGGCGCGCCGGGGCGACTGATTGTGCCGAGGAAAGATGGCTTTAAAGGGATTAAATCGATAGGCAGTATTAAGATGACCCGCGATCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGCTTTAACGTCAACGtga > 2:432205/1‑237 (MQ=255) cTTATGTCGAAGGATTGCGTCCCGAGGAAGAAATGCATCCGCTCACACTGATG‑CCCGTGGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAAt < 1:1866430/239‑1 (MQ=255) aTGTCGAAGGATTTCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAAGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGAAAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCCCCCGGAATCTGGCAGCGCCTGACGAAAGCGGTTTTTACGCCCACGTTAATcct > 2:1090934/1‑238 (MQ=255) aTGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCg > 2:1245833/1‑239 (MQ=255) aTGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCg > 1:371594/1‑239 (MQ=255) gAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGt > 2:677729/1‑239 (MQ=255) gAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATAAGGTTTTTACGCCACCGTTAATCCGTATGt > 2:669646/1‑239 (MQ=255) tGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCa > 1:905011/1‑238 (MQ=255) aaGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTc > 1:855833/1‑238 (MQ=255) aaGCAATCCATCCGCTCACACTGATG‑ACGGTGGGTG‑TTTAGGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCTGCGCTGGTca < 1:1194290/239‑1 (MQ=255) aaTGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTcaca < 1:1249402/237‑1 (MQ=255) tGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCt > 1:1300594/1‑239 (MQ=255) cccGCCCACACTGATG‑AGCGTGGGTG‑TTTGGGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCg < 2:371594/238‑1 (MQ=255) ccGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGa > 1:1293027/1‑239 (MQ=255) ccGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGa > 2:821454/1‑239 (MQ=255) cccTCACACTGATG‑CCGGTGGGTT‑TTTAGGGAAGGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGaa < 1:351694/237‑1 (MQ=255) cGCTCCCCCTGATG‑CCCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGaa < 1:1196062/239‑1 (MQ=255) cTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACg > 1:605407/1‑239 (MQ=255) cacaCTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGAt > 1:82866/1‑239 (MQ=255) acTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGGGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTa > 1:1366097/1‑239 (MQ=255) acTGATG‑ACCGTAGGCG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGCGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTa > 2:153740/1‑239 (MQ=255) tgatg‑aCCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTAtt > 2:843550/1‑239 (MQ=255) atg‑aCCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTgg > 2:246622/1‑239 (MQ=255) tg‑aCCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGt > 1:364621/1‑239 (MQ=255) g‑aCCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGt > 2:76789/1‑238 (MQ=255) g‑aCCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGt > 2:1592172/1‑238 (MQ=255) g‑aCCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGt > 2:905554/1‑238 (MQ=255) gTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGTTCAg > 2:643834/1‑238 (MQ=255) aGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGTTCAggcg > 1:1404600/1‑239 (MQ=255) | TATGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTAT‑CGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACTGATG‑ACCGTAGGTG‑TTTATGGCAAGGCGTT‑ACCGCCACAAAATGGCGCGCCGGTGCGACTGATTGTGCCGTGGAAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGTTCAGGCG > NC_007779/2042043‑2042518 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |