Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_007779	2,372,009	A→C	19.4%	H90P (CAC→CCC)	arnC →	undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007779	2,372,009	0	A	C	19.4%	126.8 / 3.6	64	H90P (CAC→CCC)	arnC	undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase
Reads supporting (aligned to +/- strand):  ref base A (14/36);  new base C (5/9);  total (19/45)
Fisher's exact test for biased strand distribution p-value = 7.42e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TATTCCCGTTTATAACGAGCAGGAAAGCTTACCGGAATTAATCAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCG  >  NC_007779/2371779‑2372243                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                tATTCCCGTTTATAACGGGCAGGAAAGCTTACCGGAATTAATCAGGCGCCCCCCCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTg                                                                                                                                                                                                                                        <  2:1699221/239‑1 (MQ=255)  aTTCCCGTTTATAACGAGCAGGAAAGCTTACCGGAATTAATCAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATTAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTgg                                                                                                                                                                                                                                       <  2:634732/239‑1 (MQ=255)  aTTCCCGTTTATAACGAGCAGGAAAGCTTACCGGAATTAATCAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTgg                                                                                                                                                                                                                                       <  1:1304315/239‑1 (MQ=255)      cggtattaaaCGAGCGGGAATGCTACCAGTAATTAATTTGGCCCCCCTCCACAGCCTGTGAATCGTTGGGTAATGCGTTGGAGATCTTGCTGATTGATGACGACAGTAGCG‑ATAATTCCGCGCATTTTCTGGTC‑GAAGCCCCACAAGCGAAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGAc                                                                                                                                                                                                                                   <  2:91768/231‑1 (MQ=255)       cGTTTATAACGAGCAGGAAAGCTTACCGGAATTAATCAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACt                                                                                                                                                                                                                                  <  1:1165614/239‑1 (MQ=255)       cGTTTATAACGAGCAGGAAAGCTTACCGGAATTAATCAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACt                                                                                                                                                                                                                                  <  1:969714/239‑1 (MQ=255)       cGTTTATAACGAGCAGGAAAGCTTACCGGAATTAATCAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACt                                                                                                                                                                                                                                  <  1:1521181/239‑1 (MQ=255)        gTTTATAACGAGCAGGAAAGCTTACCGGAATTAATCAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACtt                                                                                                                                                                                                                                 <  1:1284077/239‑1 (MQ=255)         tttATAACGAGCAGGAAAGCTTACCGGAATTAATCAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTCAGTCA‑CGTTACTGGCGGCTTa                                                                                                                                                                                                                                >  1:1699221/1‑239 (MQ=255)                  aGCAGGAAAGCTTACCGGAATTAATCAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTCACCGTTA‑TTGCGGCTTT‑atta‑tttt                                                                                                                                                                                                                      >  1:490287/1‑236 (MQ=255)                  aGCAGGAAAGCTTACCGGAATTAATCAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATACGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGAGTTCGTCC‑CCTTTCTCGCGCCTTATAtta‑tta                                                                                                                                                                                                                       >  1:1350713/1‑238 (MQ=255)                             ttacgtgAATTAATCAGCCGACCCACCACGACCTGTGAAGCGTTGGGAAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCg                                                                                                                                                                                                           <  2:701317/232‑1 (MQ=255)                                           cAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCGTATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGc                                                                                                                                                                                           <  1:618747/239‑1 (MQ=255)                                           cAGGCACACCACAACGGCCTGTGTATCGTTGAGAAAAGAGTATGAGATCCTGCTGATGGATGACGGCAGTAGCG‑AGAATTCCGCGCATATGGTGGTC‑GAAGCCTTACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGc                                                                                                                                                                                           <  2:1384580/239‑1 (MQ=255)                                            aGGCACCCCACCCCAGCCTGGGAATCGTTGGGAAACGAGGAGGAGATCCGGGTGATAGATGACGAAGGTAGCG‑CTAATGCGCCGCTTATGCTGGTC‑GTGCCCTCACAAGGGTGGCACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCC‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGAGGCCGATCTCCAG‑AATCCGc                                                                                                                                                                                           <  2:1006308/238‑1 (MQ=255)                                              gcgcACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGGTCAGTCA‑CGTTATTGGCGGCTTT‑ATTA‑TTAACCTTGTTTACGATATCCAG‑AATCCGcccg                                                                                                                                                                                        >  1:932050/1‑237 (MQ=255)                                                              tgtgAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTCA‑CGTTACTGGCGCCTTT‑TTTT‑TTACCCTTTATGCCCATTTCCCG‑AATCCCCCCAAA‑AAAAAcccccccc                                                                                                                                                                        >  1:261275/1‑238 (MQ=255)                                                              tgtgAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTGA‑CGTTACTGGCGACtt                                                                                                                                                                                                                                 >  1:887685/1‑185 (MQ=255)                                                              tgtgAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACtt                                                                                                                                                                                                                                 <  2:887685/185‑1 (MQ=255)                                                                tgAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTATTCC‑CCTTTCTGGCGCACTA‑CTTA‑TTATCCCTGTTTGCGACCCCCCG‑AAACCCCCACAA‑CAAAAcccccccccg                                                                                                                                                                      >  2:1783775/1‑236 (MQ=255)                                                                        tGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCaaa                                                                                                                                                              <  1:1117903/238‑1 (MQ=255)                                                                        tGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCaaa                                                                                                                                                              <  1:130612/238‑1 (MQ=255)                                                                        tGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGAATAGGCTGGTC‑GAAGCCTCACAAGCGGAAAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCaaaa                                                                                                                                                             <  1:1422562/239‑1 (MQ=255)                                                                          gggAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTTTCCCTTATTCCGATCTCCCG‑AAACCCCCCGAA‑AAAAAACCCCCCCCGGGGGCcaaaa                                                                                                                                                            >  1:63748/1‑237 (MQ=255)                                                                              aaGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGATTAGTCC‑CTCTACTTGCGGCCTA‑ATTATTTATCCTT‑CTGCCGGTCTCCAG‑AAACCGCCCTAA‑CAAAAACCCCCCCCCGTGGCCAAAACCggt                                                                                                                                                       >  1:1595176/1‑237 (MQ=255)                                                                                  gattGAGATCCCGTTTATTTATGGGGGGAGTGGCG‑AAAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGa                                                                                                                                                     <  1:64834/234‑1 (MQ=255)                                                                                    aTGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTCA‑CCTTTCTTGCGGCTTT‑ATTA‑TTTCCCTTGTTTCCGATATCCAG‑AAACCCCCCGAA‑AAAAAACCCCCCCTCGTGGCCAAAACCGAGGAAggg                                                                                                                                                 >  1:715738/1‑238 (MQ=255)                                                                                          tccgtcttattgatGAGGGAGGTGGGG‑ATAATTCCGCGAATATGGTGGTG‑GAAGCCCCAAAGGCGGAAACCAGCCATTTTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTCCCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTacg                                                                                                                                             <  2:1694596/229‑1 (MQ=255)                                                                                          tCCTGTTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAGGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTacgac                                                                                                                                           <  1:1422129/239‑1 (MQ=255)                                                                                          tCCTGCTGTTTGAGGACGGCAGT‑GCGTATAATTCCGCGGATATGCTGGTC‑GAAGCCTCACAAGGGGAGACCAGCCATATTGTGTCTATTTTGCTTACCCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTCCCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTacgac                                                                                                                                           <  2:63748/239‑1 (MQ=255)                                                                                          tCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTacgac                                                                                                                                           <  1:1859649/239‑1 (MQ=255)                                                                                          tCCTGCTGATTGATGACGGAAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTacg                                                                                                                                             <  1:863910/237‑1 (MQ=255)                                                                                          tCCGGCTGGTTGATGCCGGAGGTGGCA‑TAAATTCCGCGAATATGCTGGTC‑GAAGCCTCAAAGGGGGAGACCAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTacgac                                                                                                                                           <  2:490287/239‑1 (MQ=255)                                                                                          ccgtggtgattaatGCCGGCAGTACCG‑ATAATGCCCCTATTATG‑TGGTCAGAACCCTCACAAGCGGAAACCAGCCATTTTGTGTCTATTTTGCTTAACCGCAATTACGAGCAACATTCACCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTacgac                                                                                                                                           <  2:1028889/233‑1 (MQ=255)                                                                                          cccTGGTGATTGATGAGGGCAGTAGCG‑ATATTCCCGCGCATATGCTGGTC‑GAGGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTacgac                                                                                                                                           <  2:1595176/238‑1 (MQ=255)                                                                                           ccTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTTGTCC‑CGTTACTGGGGACTTA‑AATT‑TTATCCTTTTTGTCGACCCCCCC‑AAACCCCCCACA‑GAAAACACCCCCCCGGCGGCGAAAACCGCTGAAGGGTatgagg                                                                                                                                          >  1:295008/1‑237 (MQ=255)                                                                                           ccTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGGCTTA‑ATTA‑TTATCCTTTATGCCGAGCTCCCG‑AATCCCCCCGAA‑GAAAAACCCCCCCCGGGGGGGAAAGCCGATGAAGGGTacgacg                                                                                                                                          >  1:954352/1‑239 (MQ=255)                                                                                                gtgttgatGACGGCGTGAGCA‑ATATTCCCGCTCATAGGTGGTTC‑GACCCCTCAAACGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATCCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTCCCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGt                                                                                                                                      <  2:932050/235‑1 (MQ=255)                                                                                                  attgatGACGGAAGTAGCG‑ATAATTCCCCGCATATGCTGGTC‑GAAGCCTCACAAGCGAACAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAAGCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAgg                                                                                                                                   <  1:657237/239‑1 (MQ=255)                                                                                                   ttgatGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAgg                                                                                                                                   <  1:1510558/238‑1 (MQ=255)                                                                                                       tgaCGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTg                                                                                                                              <  1:257245/239‑1 (MQ=255)                                                                                                        caCGGAAGCAGCT‑ATACATCCGCGCTTTTACGGGTT‑GAAGCCTCAACAGCTGTGAACATCATTTTTGTGCTTATTTTGCTTACCCGCAATTCCGGGCACAATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTGCCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTg                                                                                                                              <  2:1410864/237‑1 (MQ=255)                                                                                                            gCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTTAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTTATGCCCATCTCCAC‑AAACCCCCCGAA‑GAAAAACCCCCCCCGGTGGCGAAAAACGATGAAGGGTACGACGGGGTGGGGGCTGTACg                                                                                                                          >  1:291731/1‑238 (MQ=255)                                                                                                                      aTAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGGCTTA‑ATTA‑TTAACCTTGTTGCCGATCTCCAG‑AAACCGCCAGAA‑GAAAACCCCCCCCCGGGGGCAAAAGCCGCAGAAGGGGACGACGTGGTAGGGACTGTAAGCCAGAACCg                                                                                                                 >  1:256742/1‑238 (MQ=255)                                                                                                                               cgcATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTTCGGCC‑CCTTTCTGGCGGATTA‑ATTT‑TTTCCCTTCGTGCCCATCTCCAG‑AATCCCCCCGAA‑GAAAAACCCCGCCCCGTGGTCAAAGCCGCAGAAGGGTACGACGTGGGAGGGGGTGTACGTCAGAAAAGCCCGGACa                                                                                                         >  1:271370/1‑237 (MQ=255)                                                                                                                               cgcATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTT‑ATTA‑TTACCCTTTATGCCGATCTCCAG‑AATCCCCCAGAA‑GAAATACCCCCCCCGGTGGCAAAAACCGATGAAGGGTACGAAGGGGTAGGGGCTGGACGCCCGAAACCCCAGGACaa                                                                                                        >  1:123789/1‑237 (MQ=255)                                                                                                                                gcATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTacg                                                                                                                                             <  1:286893/200‑1 (MQ=255)                                                                                                                                          gTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGGTTCGTCA‑CGATTCCTGCGGCCTC‑ATTA‑TTATTCTTTTTTCCGATCTCCCC‑AAACCCCCCCAA‑AAAAAAACCCCCCCCGCGGGGAAACACGACGAAGGGTACGACGTGGTAGGGGGGGCACCCCCAAACCACCCAGACAGCAGGGTTCGtgc                                                                                            >  2:175246/1‑237 (MQ=255)                                                                                                                                                                     ccATTTTGTGTCTATTTTGCTTACCCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTCCCCTTGATGCCGATCTCCAG‑AACCCGCCAGAA‑GAAACCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGc                                                                  <  1:1829158/239‑1 (MQ=255)                                                                                                                                                                               tCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTCTGTTA‑CGTTCCTTGCGACCTT‑ATTT‑TTATCCTTTTTGCCCACCTCCAG‑AAACCGCCCGAA‑GAAAACACCCCCCCGGTGGCGAAAGCCGAAGAAGGGGACGACGCGGGCGGGGCGCTACCCCCAAACCCCCCCGACAGCCGGGTTCGTGAAAACGCCCCGAAGATGCTAAAACGGGCTATTCcgcg                                                        >  2:1034106/1‑239 (MQ=255)                                                                                                                                                                               tCTATTTGGTTAACCCGAAATTCGGGGAAACATTCAGCGTTTAGGGGGGATTTCAGTCC‑CGTTACGGGGGATTTA‑ATTA‑TTCCCCTTGATGCCGATCCCAAG‑AACCCGCAAGAA‑GAAACCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGACGATTAACCGGCTTATTCAgcg                                                        <  1:1783775/239‑1 (MQ=255)                                                                                                                                                                                cTATTTTGCTTAACCGCATTTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCC‑CTTTACTGGCGACTTA‑ATTA‑TTCCCCTTGATGCCGATCCCCAG‑AACCCGCCAGAA‑AAAACCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAgcgc                                                       <  1:46037/239‑1 (MQ=255)                                                                                                                                                                                         ttAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CTTTACTGGCGACTTA‑ATTA‑TTCCCCTTGATGCCGATCTCAAA‑AACCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGc                                              <  1:371301/239‑1 (MQ=255)                                                                                                                                                                                                cAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGATTTA‑ATTA‑TTCCCCTTGATGCGGATCTCAAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGa                                       <  1:163844/239‑1 (MQ=255)                                                                                                                                                                                                 aaTTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCC‑CGTTCCTGGCGATTTA‑ATTA‑TTCCCCTTGAGGCCGATCCCCAA‑AACCCGCCAGAA‑AAAACCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGa                                       <  1:248628/238‑1 (MQ=255)                                                                                                                                                                                                         gCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACGGGCGACTTA‑ATTA‑TGCCCCTTGATGCCGATCCCCAG‑AACCCGCCAAAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGAt                               <  1:714677/238‑1 (MQ=255)                                                                                                                                                                                                           aaCATTCAGCGTTTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTCCCCTTGATGCCGATCCCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTa                             <  1:433966/238‑1 (MQ=255)                                                                                                                                                                                                           aaCATTCAGCGTTTATGGCGGAATTCAGTCC‑CGTTACTGGCGCCTTA‑ATTA‑TTCCCCTGGATGCCGACCTCCAG‑AATCCGCCAAAA‑AAAACCCCCCGCCGGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTCCGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTa                             <  1:241010/238‑1 (MQ=255)                                                                                                                                                                                                                        tATGGCGGAATTCAGTCC‑CGTTCCTGGCGCCTTA‑ATTA‑TTCCCCTTAATGCCGATCTCCAG‑AACCCGCCAGAA‑GAAACCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTAtgctgc               <  1:1219640/239‑1 (MQ=255)                                                                                                                                                                                                                           ggCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTCCCCTTGATGCCGATCCCCAG‑AATCCGCCAGAA‑GAAACCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTgcg              <  1:334737/237‑1 (MQ=255)                                                                                                                                                                                                                             cGGGATTCAGTCC‑CGTTACTGGCGATTTA‑ATTA‑TTCCCCTGGATGCCGATCCCCAA‑AACCCGCCAGAA‑GAAACCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTgcgcgc           <  1:513903/238‑1 (MQ=255)                                                                                                                                                                                                                                taTTAAGTCC‑CTTTAGTGGCGCTTTA‑ATTA‑TTCCCCGTGATGCCGATCTCCAG‑AATCCCCCAGAA‑GAAACCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGCCTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTa        <  1:796134/237‑1 (MQ=255)                                                                                                                                                                                                                                 aTTAAGTCC‑CGTTCCTGGCGGTTTA‑ATTT‑TTCCCTTTGATGCCGA‑CCCCAGAAACCCGCCAGAA‑AAAACCCCCCGCCGGGGGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTAGGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTAt       <  1:1538101/238‑1 (MQ=255)                                                                                                                                                                                                                                     aGTCA‑CGTTACTGGGGGCTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATACCCCGCCTGGGGGCCAAAGCCGATGAAGGGTACGACGTGGGAGGGACTGTACGCCCGAACCGCCCGGACAGCTGGGTTCGTAAAACCGCTTCGAAGATGATTAACCGGCCTATTCAGCGCACCACTGGCCAAACGATGGGGGATTACGGGTGTATGCTGCGCGCCTATCGcc   >  2:334737/1‑238 (MQ=255)                                                                                                                                                                                                                                       caa‑CGTTAGTGG‑GTCTTT‑ATTA‑TTCCCCTTGGCGGCGGTCCCCAG‑GAACCCCCCGAAGGAAACCCCCCGCCTGGTGGAAAAGGCCGTGAAAGGTTCCGACGTGTTAGGGACTGTCCGCCAGACCCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCg  <  2:1516537/235‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                TATTCCCGTTTATAACGAGCAGGAAAGCTTACCGGAATTAATCAGGCGCACCACCACAGCCTGTGAATCGTTGGGGAAAGAGTATGAGATCCTGCTGATTGATGACGGCAGTAGCG‑ATAATTCCGCGCATATGCTGGTC‑GAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCA‑CGTTACTGGCGACTTA‑ATTA‑TTACCCTTGATGCCGATCTCCAG‑AATCCGCCAGAA‑GAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCG  >  NC_007779/2371779‑2372243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑