| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 3,485,352 | A→C | 26.4% | A590A (GCA→GCC) | ppc → | phosphoenolpyruvate carboxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 3,485,352 | 0 | A | C | 26.4% | 122.5 / 4.2 | 76 | A590A (GCA→GCC) | ppc | phosphoenolpyruvate carboxylase |
| Reads supporting (aligned to +/- strand): ref base A (12/38); new base C (8/15); total (22/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.01e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AACAACGCCAACGATGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACTGTCAGTCATCTCCTGCGATG > NC_007779/3485116‑3485581 | aacaacGCCAACGATGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTTGCGGCGGGGCAc > 1:1520407/1‑238 (MQ=255) cGCCAACGATGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTTCATTTGGAGCGGCGGGGCACCTGCt > 1:262974/1‑238 (MQ=255) cGCCAACGATGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCt > 1:1052665/1‑238 (MQ=255) aCGATGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGTGGCGGCGCCCCCGCCCATgcg > 2:697507/1‑239 (MQ=255) gTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCgct < 2:1052665/239‑1 (MQ=255) tCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGc < 1:946413/226‑1 (MQ=255) tCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCgct < 1:1681937/238‑1 (MQ=255) cATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCgctgc < 1:1207187/239‑1 (MQ=255) ccggctgctCATTGTGAACGGGTTTCGGGGCCTGATTCAGGGAAAACAGATGGTGATGTTTGGCTATCCCGACTAAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CAAGGGATGCATTAATCAAACCCTGGGAAAAGGCGGGTATGGAGCTGACTTTGTG‑CCACGGTCGCGGCGGTTCCTTTGGCCGGGGCGGCGCCCCTGCTCATGCGGCGTTGTTG‑T‑cac < 2:640510/236‑1 (MQ=255) aGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGGTTCAGTGGGCGCGGCGGCGCACCCGGTCTTGCGGCgctgctctgaac > 1:1114475/1‑232 (MQ=255) ctCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCCTTGGTTGGGGCGGCGCCCCCGCCCCAGCGGCGccgctggccccacccc > 1:640510/1‑228 (MQ=255) gACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCt < 1:398599/239‑1 (MQ=255) gtGGTATCGTGCCCGGATTAAGGGCAAACAGATGGTGGTGATTGGCTATTCCGACTCAGCAAAAGATGCGGGGGTGATGGC‑AGCTTCCTGGGCGAAATATCAGG‑CACAGGATGCATTAATCAAACCCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGGGGCGGCGCACCTGCTCATGCGGCGCTGTTG‑T‑CAC‑AACCGCCAGGAAGCCTGa < 2:156815/238‑1 (MQ=255) tATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCCTTGGTCGCGGCGGCGCCCCCGCTCCTGCGGCGCCGCTG‑G‑CCC‑AACCGCCCGGGAGccgggaaag > 1:38372/1‑232 (MQ=255) tATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCCTTGGGCGCGGCGGCGGACCCGCTCCTGCGGCGCTGCTG‑T‑CAC‑AAACCCCAGGGAGGCTGaaaag > 1:239074/1‑237 (MQ=255) tATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTGCCCATGTTGTCGGCGGGGCCCCCGCTCCCATGGCGCCGCTG‑TGCAC‑ACCCCCCGGGAAcccgtaagg > 2:1556041/1‑233 (MQ=255) gTGGCCTTGTTCAGGGCACAGAGATGGGGATGGTTGGTTAGTCAGACTCGGCAAAAGAGGCGGGAGTGAGGGC‑AGCTTCCTGGGCGAAATATCAGG‑CACAGGAGGCATTAATCAAAACCTGCGAAAGAGCGGGTATTGGGCGGACGTTGTT‑CCCCGGTCGCGGCGGTTCCATTGGGCGGGGCGGCGAACCTCCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAggcggc < 2:769090/239‑1 (MQ=255) gTGGCCTGTTACAGGGCAAAAAGAGGGTGTTGATGGGCTTTTCGAACTCAGCAAAAGACGCGGGAGTAATGGC‑AGCTGCCTGGGGGAAATATGAGG‑CACAGGATTCTTTAATAAAATCCGGCGAAAAAGGGGGTATTGGGATGACTTTGTC‑CCCGGGTCGCGGCGGTTCCATTGGGCGCGGCGGGGCTTCTGCTCATGCGGGGTTGCTT‑T‑AAC‑AACCGCCAGGAAGCCTGAAAggcggc < 2:1664404/239‑1 (MQ=255) gTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAggcggc < 1:522259/239‑1 (MQ=255) gCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTTGTAACGGCGGGCCACCCGCTACTGCAGCGCCCCTG‑C‑TAC‑AACCGCCACGGAGCCTGAAAGGGCGCCt > 1:1866848/1‑238 (MQ=255) cggATTCAGGGAAAACGGATGGTGATGTTTGGCTATTCCGACTCAGAAAAAGATGGGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGGGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCCCCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTgcg < 2:943364/237‑1 (MQ=255) cTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGCCGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCCCATGGGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTgcg < 2:250078/239‑1 (MQ=255) tGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTTGTCGCGGCGGGGCCCCCGCGCCTGCGGCGCCGGCG‑T‑CAC‑AACCCCCCGGGAGCCCGGAAGGCGGGCCgcgc > 1:1138828/1‑239 (MQ=255) gATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGcgcg < 1:1157693/239‑1 (MQ=255) aTTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGGGCCCCTCCTCATCCGGCGCGGCTG‑T‑TCC‑CACACCCCCGAAACCCCAAAGGCGGGCTGGGCGt > 1:1599731/1‑239 (MQ=255) cAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGTTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGaa < 1:1762991/238‑1 (MQ=255) cAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGaa < 1:825894/238‑1 (MQ=255) cAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGaa < 1:1345837/238‑1 (MQ=255) gggtGGGGATGGTGGGTTTTTCCGACTCAGC‑AAAGATGGGGGGGGGGAGGCAACCTTCCTGGGCGAAACATAAGG‑GACGGGTGGGATTAATCAAAACCTGTAAAAAGGCGGGTATTGGGCTGTCGTTGTC‑CCAGGGCCGGGGCTGTTCCATTGGGCGCGGCGGCGCCCCTGCCCAGGCGGCGCTGCTG‑G‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGc < 2:1659407/236‑1 (MQ=255) gtGGTGATGATTGGAGTTTCCGACGCATCAAAAGATGCGGGGGTGATGGC‑AGCTTCCGGGGGGAAATGTCAGG‑CACAGGAGGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGGGCTGACGTTGCT‑CCCCGGTGGGGGCGGTTCCAGTGGTCGGGGGGGCGCCCTCGCTCATGGGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGc < 2:928477/236‑1 (MQ=255) tGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAggg < 1:1617642/235‑1 (MQ=255) tgatTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAgatgat < 1:18960/238‑1 (MQ=255) tgatTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAgatgat < 1:1242318/238‑1 (MQ=255) tgatTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAgatgat < 1:516250/238‑1 (MQ=255) tgatTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAgatgat < 1:1565622/238‑1 (MQ=255) gatGGGCTATCCCGACTCACCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATc < 2:1138828/238‑1 (MQ=255) tGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCt < 1:1834098/239‑1 (MQ=255) ttCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGAAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAgatgat < 1:42765/228‑1 (MQ=255) cGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATg < 1:1621026/239‑1 (MQ=255) aCTCAGCAAAAGAGGCGGGAGTGATGGC‑GGCTTCCGGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAACCCTGCGAAAAAGCGGGTATGGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCCCCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGt < 2:38372/239‑1 (MQ=255) cTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTTCCTTGGGCGCGGGGGGGCACCCGCCCATGCGGGGGCGCTG‑G‑CCC‑AACCGCCACGGAGCCCGAAAGGGGGCCTCCGCGGAACCGAACAAGGCGAGAGGAGGCGCTTTAAATATgtgc > 2:545501/1‑236 (MQ=255) accTTCCTGGGCGAAAAATCGGG‑CCCGGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGGGCTGAC‑TTGTTCCCACGGCCGCGGCGGTTCCTTTGGTCGCGGCGGCGCCCCTGCCCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGt < 2:239074/237‑1 (MQ=255) aGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTg < 1:1284137/238‑1 (MQ=255) aGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTg < 1:851110/238‑1 (MQ=255) ttCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGt < 1:1754812/236‑1 (MQ=255) ttCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGt < 1:545501/236‑1 (MQ=255) tCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCCCCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCt < 1:1249149/239‑1 (MQ=255) tCCGGGGCGAAAT‑TCAGGTCACAGGTTGCATTAATCAAACCCTGGGAAAAAGCGGGTTTTGGGCGGATGTTGTT‑CCAGGGTCGCGGGGGTCCCATTGGCCGGGGCGCCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCt < 2:1114475/239‑1 (MQ=255) aaTATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCGCCCCCCCATGCGGCGCCGCCG‑T‑CCC‑AACCCCCAGGAAGACTGCAACGCGGCCCGCGCGGAACCCAACAAGGCGCGGGGGTCCCGCTTAAAAATGGGTTGCCAGAAAACACCGT‑CACCAGCCCGTCCCTCTATAACgg‑g > 2:32764/1‑239 (MQ=255) cacaGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCt < 1:1162974/238‑1 (MQ=255) aaTCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTTCATTTGGGGCGGCGGGGCCCCCGCTCACTCCGCGCCGGCG‑T‑CACAAACCCCCAGCAAACC‑GCAAGGGGGGCCGCGCGCAACCGAACAGAGGGAGAGGAAACCCGTTTAATATAGTGTGCCCCAAATAACCGC‑CCGCACCCTCTCGCTTTATACAGG‑GGCGGTTCGGGGTGCCAAcccg > 2:805511/1‑236 (MQ=255) aTCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATgcggc < 1:1214619/92‑1 (MQ=255) tCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGCTACCTTGGGTGCGGCCGCTCCCCCTCCCCCCGGGCGCCGCTGTT‑CCC‑ACCCCCCCGGAGCCCAGAAAGCCGCCCGCCGCGCACCCGAACAGGGCGGGATGTCCCCCTTTAAAAATGTGCGGCC‑GAAAACACCGTCCAGC‑GCCCGTTGCTTTTTTACTG‑GGGGGCTGTGGAAGGCAACctcgc > 2:1759484/1‑235 (MQ=255) aaCCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTTCCTTTGGCGCGGCGGCGCGCCCGCCCACGCGGCGCTGCTG‑T‑CAC‑AACCCCCCGGGAGCCCGAAAAGGGGGCCGCGCGGGACCGCACAGGGCGAGGGGGACCCCTCTAAAAATGGGCTGCCCGACAACACCCG‑CCGGCGCCTGTCCCTTTTTAACGGCGGGGGTTCT‑GAAGGCAAACTGCGGccc > 2:448322/1‑237 (MQ=255) ggACGTTGTT‑CCCCGGCGGCGGCGGTTCCATTGGCCGCGGCGGGGCCCCTGCTCATGGGGCGCTGTTT‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGt < 1:953977/238‑1 (MQ=255) tgtt‑CCCCGGTCGGGGCGGTCCCATTGGTCGCGGCGGCGCACCTGCCCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCAtt < 1:1799294/239‑1 (MQ=255) cACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCCCCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGa < 1:689339/239‑1 (MQ=255) cGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATg < 1:888615/239‑1 (MQ=255) tCGCGGCGGTTCCATTGGTCGCGGCGGCGCCCCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGaa < 1:1728204/238‑1 (MQ=255) tCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCAGGCGGCGCTGCTG‑T‑CAA‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGt < 1:1023641/223‑1 (MQ=255) ggggggcgtTTCCGTTGTTCGCGGCGTCGCCCCGGCTGCGGGGGCGGAGGTG‑A‑CAA‑TACCGCCAGGAAGCCTGAAAGGCGGTCTGAGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGGCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCGCCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGaa < 2:262974/234‑1 (MQ=255) gcggcgGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACt < 1:1198062/238‑1 (MQ=255) ggcggTTCCATTGGTCGCGGCGGCGCCCCTGCCCATCCGGCGCTGCTG‑C‑AAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACTgt < 1:483202/238‑1 (MQ=255) ggcggTTCCATTGGGCGCGGCGGCGCCCCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACTgt < 1:448322/238‑1 (MQ=255) aTTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACTGTCAGTCAtct > 1:1843952/1‑238 (MQ=255) tGGTCGCGGCGGCGCACCTGCTCAGGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACTGTCAGTCATCTCCt < 1:697507/239‑1 (MQ=255) gggTCGCGGCGGCGCCCCTGCTCACGCGGCGCTGCTG‑C‑CAC‑ACCCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACTGTCAGTCATCTCCt < 1:97788/238‑1 (MQ=255) cggcggcgccgCACCTGCTCAGGCGGCGCTG‑TG‑TCCAC‑ACCCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACTGTCAGTCATCTCCTGc < 2:1422463/236‑1 (MQ=255) cgggggggcgCCCCTGCTCATGCGGCGCTGCTG‑T‑CAC‑ACCCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACTGTCAGTCATCTCCTGCg < 1:430688/232‑1 (MQ=255) cggcggcgCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGTGCGAGATTATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑TGCGATTCTGGAACCCAAGCTGCTGCCACCGCCGGAGCCGAAATAGAGCTGGCGTCGCATTAGCGAAGATCTGTCAGCCAACTCATGCGATg > 2:1480343/1‑239 (MQ=255) cgcACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCTAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACTGTCAGTCATCTCCTGCg > 2:307260/1‑230 (MQ=255) cgcACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGaa > 2:878135/1‑70 (MQ=255) cgcACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGaa < 1:878135/70‑1 (MQ=255) cgcACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATAc > 1:352607/1‑138 (MQ=255) cgcACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACTGTCAGTCATCTCCTGCg < 1:307260/230‑1 (MQ=255) cgcACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTACCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATAc < 2:352607/138‑1 (MQ=255) | AACAACGCCAACGATGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGC‑AGCTTCCTGGGCGCAATATCAGG‑CACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTT‑CCACGGTCGCGGCGGTTCCATTGGTCGCGGCGGCGCACCTGCTCATGCGGCGCTGCTG‑T‑CAC‑AACCGCCAGGAAGCCTGAAAGGCGGCCTGCGCGTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGT‑CAGCAGCCTGTCGCTTTATACCGG‑GGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACTGTCAGTCATCTCCTGCGATG > NC_007779/3485116‑3485581 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |