BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_007779	4,140,820	C→A	14.6%	C50F (TGC→TTC)	Y75_RS20420 ←	YhfL family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007779	4,140,820	0	C	A	14.6%	276.7 / 5.5	106	C50F (TGC→TTC)	Y75_RS20420	YhfL family protein
Reads supporting (aligned to +/- strand): ref base C (63/26); new base A (2/15); total (65/41)
Fisher's exact test for biased strand distribution p-value = 7.11e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 106 total aligned reads displayed.

GAATATAACAACATATGATGTTATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCTATGTATTATATATTAATTAATATTCATTGATTATATGAATATAAGCAGACTGCTCGTTAAGAA  >  NC_007779/4140585‑4141042

gaATATAACAACATATGATGTTATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCaa                                                                                                                                                                                                                               >  1:95404/1‑238 (MQ=255)

  atatAACAACATATGATGTTATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑cc                                                                                                                                                                                                                            >  1:1396860/1‑238 (MQ=255)

   tataACAACATATGATGTTATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCg                                                                                                                                                                                                                           >  1:1422680/1‑238 (MQ=255)

    ataACAACATATGATGTTATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GAAA‑CCGc                                                                                                                                                                                                                          >  2:944773/1‑238 (MQ=255)

        caacaTATGATGTTATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATg                                                                                                                                                                                                                     >  1:1010496/1‑239 (MQ=255)

           caTATGATGTTATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGGTGGAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCACTCGGAAAATC‑AA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGAtt                                                                                                                                                                                                                  >  1:121922/1‑239 (MQ=255)

           caTATGATGTTATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGTGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGAtt                                                                                                                                                                                                                  >  2:400918/1‑239 (MQ=255)

           caTATGATGTTATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGAtt                                                                                                                                                                                                                  >  2:707829/1‑239 (MQ=255)

           caTATGATGTTATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGAtt                                                                                                                                                                                                                  >  1:97439/1‑239 (MQ=255)

           caTATGATGTTATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGAtt                                                                                                                                                                                                                  >  2:723285/1‑239 (MQ=255)

             tatGATGTTATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGAtttt                                                                                                                                                                                                                >  1:251419/1‑239 (MQ=255)

             tatGATGTTATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGAGTC‑GGGC‑AATTAAA‑CC‑GG‑CGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGAtttt                                                                                                                                                                                                                >  2:743972/1‑239 (MQ=255)

                   gTTATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTtagaaat                                                                                                                                                                                                          >  1:1228502/1‑239 (MQ=255)

                     tATGTAATGTGGAGGCAGATTACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑CGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GCGCAGTAGGACC‑GCAA‑CCGCCAATGATTTtagaaatag                                                                                                                                                                                                        >  2:1007026/1‑239 (MQ=255)

                     tATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTtagaaatag                                                                                                                                                                                                        >  1:1410098/1‑239 (MQ=255)

                      aTGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTtagaaatagc                                                                                                                                                                                                       >  2:1868017/1‑238 (MQ=255)

                       tGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTtagaaatagaa                                                                                                                                                                                                      >  1:1255547/1‑239 (MQ=255)

                       tGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTtagaaatagaa                                                                                                                                                                                                      >  1:352672/1‑239 (MQ=255)

                         tAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTagaaatagaaat                                                                                                                                                                                                    >  1:1123571/1‑239 (MQ=255)

                            tgtgGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTg                                                                                                                                                                                                  >  1:1189167/1‑238 (MQ=255)

                            tgtgGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTg                                                                                                                                                                                                  >  1:20644/1‑238 (MQ=255)

                            tgtgGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTg                                                                                                                                                                                                  >  1:833304/1‑238 (MQ=255)

                            tgtgGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTg                                                                                                                                                                                                  >  1:1091600/1‑238 (MQ=255)

                            tgtgGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTg                                                                                                                                                                                                  >  1:561303/1‑238 (MQ=255)

                            tgtgGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GCGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTg                                                                                                                                                                                                  >  2:257025/1‑238 (MQ=255)

                              tgGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACG‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCg                                                                                                                                                                                               >  2:1795057/1‑239 (MQ=255)

                              tgGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCg                                                                                                                                                                                               >  1:1226246/1‑239 (MQ=255)

                                 aggaAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGt                                                                                                                                                                                            >  2:943572/1‑239 (MQ=255)

                                   gaAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGgcgc                                                                                                                                                                                          >  2:510037/1‑239 (MQ=255)

                                   gaAGACCAAAAAATTTCGCAAAGGTTGGGGTTGTGGTTATTGGATGTATTTATCAAATTA‑AATAAAAAGAG‑AAATTTTTTT‑ACGGGGCGGGGG‑AAAGAAGG‑AAATAAAAACAAATCCCCCCCCGAAAAACC‑GG‑GAGGGGGTC‑GGGA‑AATAAAC‑CG‑GG‑TGTTCGCCTTTTTCTGTCAGGTATTT‑TTT‑GTGAAGTGGGCCC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTg                                                                                                                                                                                           <  2:1678307/238‑1 (MQ=255)

                                        tCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGcagcag                                                                                                                                                                                     >  1:787019/1‑239 (MQ=255)

                                           caAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑GGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTa                                                                                                                                                                                  >  1:520463/1‑239 (MQ=255)

                                           aaaaaTTGCGCACAGGGTCGTGGTGTGGATAATGGGTGTAGTTATAAAATT‑‑ATATTAAAG‑GAAAAAATTTTTGTG‑GGGGGGGGG‑CAAAAAGGAAAAAAAAAACAACGCCCCCCGCGAAAAATC‑GA‑GGGGGCGCG‑GGGC‑AATAAAC‑CG‑GG‑TGTTAGCCTTTTTTGGTCAGAGCTTT‑ACG‑GTGCGGAAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTa                                                                                                                                                                                  <  2:438454/238‑1 (MQ=255)

                                                      aaaGGCTCGCGTGGTGGATAAGGGA‑GTAGTTATAAAAATGAAATATAAAATAAAAATTTTTTG‑CG‑GGGGGGGGG‑GAAAAAGA‑AAAAAGAAAAAAATCCGCCCTGGAAAAATC‑AA‑GGGGGTGGC‑GGAA‑AAAAAAA‑CG‑GT‑TGTTGGCCGATTTCTATCAGAGTCTT‑AGT‑GGGCAGTAGGCCC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAagag                                                                                                                                                                        <  2:1422680/236‑1 (MQ=255)

                                                               cgcTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTa                                                                                                                                                               >  1:410111/1‑238 (MQ=255)

                                                                  tgtgGTTAAGGGTTGTATTAATAAAATTA‑AATTTAAATAAAAAATTTTTTG‑GC‑GGGGGGGGG‑AAAGAAGG‑AAAAAAAAAAAAACCCCCCCGCGAAAAATC‑CA‑GGGGGGGTC‑GGGC‑AATAAAA‑CC‑GG‑GTTTAGCCGATTTATGTCAGAGATTT‑ACT‑GTGCAGGGGGCCC‑GAAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCa                                                                                                                                                            <  2:1281778/238‑1 (MQ=255)

                                                                  tgtgGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCAc                                                                                                                                                           >  1:975864/1‑239 (MQ=255)

                                                                    tgGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACgg                                                                                                                                                         >  1:1424874/1‑239 (MQ=255)

                                                                    tgGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACgg                                                                                                                                                         >  1:1802104/1‑239 (MQ=255)

                                                                       ttaggggATGAAGTTAAAAAATGA‑AATTAAAAGAAAAAAT‑TTTTT‑ACGGGGGGGGGG‑AAAGAAGA‑AAAAAGAAAAAAATCCCCCCT‑GGAAAAAT‑CA‑GGGGGGGGT‑GGGG‑AAATAAA‑CC‑GGTTGTTAGCGGTTTTCTGTAAGAAATTT‑ACT‑GGGCGGGAGGCCC‑ACAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGtt                                                                                                                                                       <  2:561303/233‑1 (MQ=255)

                                                                       ttAATGGATGTAGTAATAAAATAG‑AATTAAAAGAGAAAATATTTGT‑GC‑GGGGGGGGA‑AAAGAAGG‑ACATAGAAACAAATACGCCCTCGAAAAATC‑GG‑GAGGGCGTC‑GGGA‑AATAACG‑CC‑GG‑TGTTGGCCTATTTTTGTAAGAGATTT‑ATT‑GGGCAGTGGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGttt                                                                                                                                                      <  2:1226246/238‑1 (MQ=255)

                                                                       taaaTGGATTGAGTTAAAAAATTA‑AATTAAAAGAAAAAATTTTTTG‑GG‑GGGGGGGAG‑AAAGAAGG‑AAAAAAAAACAAACCCGCCC‑GGGAAAAAC‑CAGGGGGGGGTC‑GGAA‑AATAAAC‑CG‑GG‑TGTAGCCCTTTTTTTGTAAGAATTTT‑ATG‑GGGCGGGGGGACC‑CAAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGttt                                                                                                                                                      <  2:1010496/237‑1 (MQ=255)

                                                                       cTAATGGATTTAGTTATAAAATTA‑ATTTAAAAGTAAAAATATTTTT‑AG‑GGGGGGGGG‑AAAGAAGG‑AAATAAAAAAAAATACGCCCTGGAAAAACC‑AA‑GAGGGCGTC‑GGGC‑AATAAAA‑CC‑GG‑TGTTAGCCGTTTTCTGTCAGAGATTT‑CCT‑GTGCAGTAGGCCC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGtt                                                                                                                                                       <  1:514920/238‑1 (MQ=255)

                                                                           tGGATGTAGTTATAAAATTA‑ATTTAAAAGTAAAAATATTTTG‑AC‑GGGGGGGGG‑AAAGAAGA‑ACATAAAAAAAAATACGCCCGCGAAAAATC‑CA‑G‑GGGCGTC‑GGGC‑AATAAAA‑CG‑GG‑TGTTAGCCGTTTTCTGTCAGAGATTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAat                                                                                                                                                 <  1:1701221/239‑1 (MQ=255)

                                                                            ggATGTATTTAAAAAATTG‑AATTAAAAGTAAAAATATTTTG‑CG‑GGGCGGGGG‑AAAGAAGA‑AAAAAAAAACAAATCCGCCCTCGGAAAACC‑CA‑GAGGGCGCC‑GGGA‑AATAAAA‑CG‑GG‑TGTTAGCCGTTTTCTGTCAGAGACTT‑ACT‑GTGAAGTAGGCCC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAat                                                                                                                                                 <  1:791047/239‑1 (MQ=255)

                                                                                gTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATg                                                                                                                                              >  1:480746/1‑238 (MQ=255)

                                                                                gTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATg                                                                                                                                              >  1:462186/1‑238 (MQ=255)

                                                                                gTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATg                                                                                                                                              >  1:304677/1‑238 (MQ=255)

                                                                                gTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GAAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATg                                                                                                                                              >  1:1820782/1‑238 (MQ=255)

                                                                                 tAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGa                                                                                                                                             >  1:582564/1‑238 (MQ=255)

                                                                                  atttATAAAATTA‑AATTAAAAATAAAAATATTTTA‑GC‑GGGGGGGGG‑AAAGAAGA‑AAAAAAAAACACAGAGGCCCTGAAAAAAAC‑CG‑GGGGGAGGA‑GGGA‑AATAAAG‑CC‑GG‑TGTTAGCCGTTTTCTAACAAAGCCTA‑AC‑‑GTGGAGGGGGCCCACCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGAcc                                                                                                                                           <  2:258696/237‑1 (MQ=255)

                                                                                  attaaaaaaatta‑aattAAAAGTAAAAAT‑TTTTT‑GC‑CGGGGGGGG‑GAAGAAAG‑AAAAAAAAAAAAAACCCGCCCCAGAAAAAC‑CA‑AGGGGGGTC‑GGGG‑AAATAAAGCC‑GG‑TTTTACCCTATTTCGTTAAGAAATTT‑TCT‑GTGCAGGGGCACC‑CAAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGAcc                                                                                                                                           <  2:1255547/232‑1 (MQ=255)

                                                                                  aGTTATAAAATTG‑AATTTAAAGTGAAAATATTTTT‑CC‑GGGCGGGGG‑AAAGAAGG‑ACAAAGAAACAAATCCGCCCTCGGAAACAC‑AA‑GAGGGCGTG‑GGGA‑AATAAAC‑CC‑GG‑TTTTGGCCGTTTCGTGTAAGAACCTT‑CCG‑GTGCATTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGAcc                                                                                                                                           <  1:257025/239‑1 (MQ=255)

                                                                                  aGTTAAAAAATTG‑AATATAAAGTAAAAATATTTGT‑GG‑GGGGGGGGG‑AAAGAAGA‑AAAAAAAAACAAATCCGCCCTCGAAAAACC‑CA‑GGGGGCGGC‑GGGA‑AATAAAC‑CC‑GG‑TGTTGGCCGTTTTCTGTCAGAGATTT‑ACT‑GGGCAGGGGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGAcc                                                                                                                                           <  2:1098333/239‑1 (MQ=255)

                                                                                      aTCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGt                                                                                                                                                                             >  1:200131/1‑201 (MQ=255)

                                                                                      aTCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGt                                                                                                                                        >  1:1098333/1‑238 (MQ=255)

                                                                                      aTCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGt                                                                                                                                        >  1:635199/1‑238 (MQ=255)

                                                                                       tCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑AGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTGAATATGACCAGTAc                                                                                                                                      >  1:1337977/1‑239 (MQ=255)

                                                                                        cAAATTG‑AACTTCAAGTGAAACTATTTTT‑AC‑GGGCGGGCG‑CAAGAAGC‑ACCTAGAAACAAATACGCCCTCGCAAAATC‑CA‑GACGGCGTC‑GCGC‑AATTACA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGACACTT‑ACT‑GCGCAGCAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCCGGTGCAGCAGGAAGTCGTAAGAGCAGTTCTTATCAGGGTTTTCAATATGACTAGTACa                                                                                                                                     >  2:162310/1‑239 (MQ=255)

                                                                                         aaaatgaaaTTAAAAGTAAAAATTTTTGT‑GG‑GGGGGGGGG‑AAAAAGGA‑ACAAAAAAACAAGCCCCCCCCCGAAAAACC‑GA‑GGGGGCGTG‑GGGA‑AATAAAC‑CT‑GG‑TGTGCCCCTTTTTCTTGAAGAGATTT‑ACT‑GTGCAGGGGCCCC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACa                                                                                                                                     <  2:668329/232‑1 (MQ=255)

                                                                                             attaaattAAAGAGAAAAATTTTTT‑AG‑GGGGGGGGGCCAAAAAGA‑AAAAAAAAAAAAATACGCCCTGGAAAACCC‑CA‑GAGGGCGCC‑GGGA‑AAAAAAC‑CG‑GG‑TGTTGGCCATTTTCTGTAAGAAACTT‑ATT‑GTGCAGTAGGACC‑GAAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGc                                                                                                                                  <  1:743972/233‑1 (MQ=255)

                                                                                                   taaaaGTAAAAATTTTTTT‑AG‑GGGGGGGGA‑AAAGAAGG‑ACAAAAAAAAAAATCCGCCCTGGAAAAACC‑AA‑GGGGGGGCG‑GGGA‑AATTAAC‑CG‑GG‑TGTTAGCCTATTTCTGTAGGATATTT‑GTT‑GTGAAGAAGAACG‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAAc                                                                                                                           <  1:510037/237‑1 (MQ=255)

                                                                                                       aGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCAc                                                                                                                                                           >  1:1806910/1‑203 (MQ=255)

                                                                                                          aaaaaTTTTTTT‑GG‑GGGGGGGGG‑AAAGAAGG‑AAATAAAAACAAATCCCCCCTGGAAAAACC‑CG‑GGGGGCGTC‑GGGA‑AATAAAC‑CC‑GG‑TGTTAGCCGTTTTCTGTGAGAGACTT‑ATT‑GGGCAGTAGGCCC‑GCAA‑CCGCCAATGATTTTAGAAATAGAGATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGc                                                                                                                      <  1:158010/236‑1 (MQ=255)

                                                                                                          aaaaaTTTTTTT‑GC‑GGGGGGGGG‑AAAGAAGA‑ACATAGAAAAAAATCCCCCCTCGGAAAACC‑CA‑GGGGGCGTG‑GGGC‑AATTAAC‑CC‑GG‑TGTTAGCCGATTTCTGACAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGc                                                                                                                      <  1:1718289/236‑1 (MQ=255)

                                                                                                             aaTGTTTGT‑GC‑GGGAGGGGG‑CAAGAAGA‑ACATAAAACCAACGACGCCCT‑AGAAAAGC‑CAGGGGGGCGGC‑GGGC‑AATAAAG‑CC‑GG‑TGTTGGCCATTGTCTGTCAGAGATTT‑ATT‑GTGCAGTGGGCCC‑CCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTa                                                                                                                 <  2:352672/239‑1 (MQ=255)

                                                                                                             aaTATTTTG‑AG‑GGGGGGGGG‑AAAGAAGA‑AAAAAAAAACAAATACCCCCT‑GGAAAACCGCG‑TGGGGCGCC‑GGAA‑AAAAACC‑CG‑GG‑TGTGAACGTTTTTCTGAAAGAGACTG‑GAT‑GGGCGGGGGGACC‑GAAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTa                                                                                                                 <  2:582564/239‑1 (MQ=255)

                                                                                                              attttttt‑AG‑GGGGGGGGG‑GAAGAAGG‑AAAAAAAAAAAAATCCCCCCTCGGAAAACC‑CA‑GGGGGGGGC‑GGGA‑AAATAAA‑CC‑GG‑TGTTGACCCTTTTTTGGAAAAAATTT‑AATGGTGAGGGGGGCCC‑CAAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTa                                                                                                                 <  2:1410098/236‑1 (MQ=255)

                                                                                                              ataaTTTT‑GC‑GGGGGGGGG‑GAAAGAAG‑AAAAAAAAACAAACTCCCCCCCAAAAAAAC‑CC‑GGGGGGGGC‑GGGCAAATTAAC‑CC‑GT‑TTTTCGCCTATTTCTGAAAGAGATTT‑AGG‑GTGCAGTGGGACC‑CCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTa                                                                                                                 <  2:1802104/239‑1 (MQ=255)

                                                                                                                  tttt‑AG‑GGGGGGGGG‑AAAGAAGG‑ACAAAGAAAAAAATACGCCCTGGAAAAATC‑CA‑GAGGGCGGC‑GGGA‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGATACTT‑ACT‑GGGCAGTGGGACC‑ACAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCa                                                                                                            <  1:943572/239‑1 (MQ=255)

                                                                                                                    tttgagggggggggG‑AAAGAA‑G‑AAAAAAAAAAAAAACCCCCCCCGGAAAAAC‑CG‑GGGGGGGGT‑GGGA‑AAATAAA‑AC‑GGTTTTTAGCCGTTTTCTGTAAAAAATTT‑ACT‑GGGAGGAGGGCCC‑GAAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCa                                                                                                            <  2:1396860/233‑1 (MQ=255)

                                                                                                                     ttgggggggggggG‑AAAAAAAG‑ACAAAAAAAAAAAGCCGCCCAGGGAAAACC‑CG‑GGGGGGGGC‑GGGA‑AAATAAA‑CCGGG‑TTTGAGCCTTTTTCGGTAAGA‑ACTTGTCT‑G‑GAAGGAGGGCC‑CAAACCCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCa                                                                                                            <  2:1424874/234‑1 (MQ=255)

                                                                                                                          ggggggggG‑AAAGAAGG‑AAATAAAAAAAAACCCGCCCTCGAAAACCC‑CA‑GGGGGCGGC‑GGAA‑AATTAAC‑CC‑GG‑TGTTAGCCGTTTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGCCC‑GAAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTAc                                                                                                       <  1:558564/238‑1 (MQ=255)

                                                                                                                           ggcgggGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCa                                                                                                     >  1:1270297/1‑239 (MQ=255)

                                                                                                                            gcgggGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAg                                                                                                    >  2:1327298/1‑239 (MQ=255)

                                                                                                                                        aagG‑AAAAAAAAAAAAATCCGCCTTAGAAAAACC‑CG‑GAGGGGGTC‑GGAA‑AATAAAC‑CC‑GG‑TGTTAGCCGTTTTCGTAAAGAGATTT‑ACT‑GTGAAGTAGGCCA‑GAAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTtaa                                                                                         <  1:1868017/239‑1 (MQ=255)

                                                                                                                                              cATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAAt                                                                                    >  1:321122/1‑239 (MQ=255)

                                                                                                                                               aaaaaaaCAAA‑ACCCCCCGGGAAAACC‑CA‑GGGGGGGGC‑GGGA‑AAATAAA‑CCTGG‑TGTTGCCTTTTTTCTGTAGGAGTCTT‑ACT‑GTGAAGTAGGACC‑CAAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAAtt                                                                                   <  1:400918/235‑1 (MQ=255)

                                                                                                                                                    aaCAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGtt                                                                                                                                                                   >  1:1576180/1‑154 (MQ=255)

                                                                                                                                                      cAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCAt                                                                            >  1:898420/1‑239 (MQ=255)

                                                                                                                                                          tccgcctgcgaaaaaCC‑CA‑GGGGGCGTG‑GGGA‑AATAAAC‑CG‑GG‑TGTTAGCCGTTTTCTGTCAGAAATTT‑ACT‑GGGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTAc                                                                        <  1:707829/228‑1 (MQ=255)

                                                                                                                                                           aCGCCTTAGAAAAATC‑CA‑GGGGGCGCC‑GGAC‑AATAAAC‑CC‑GG‑TGTTAGCCGTTTTCTGTCAGAGTCTT‑ACT‑GTGCAGTAGGCCC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACa                                                                       <  1:1558379/239‑1 (MQ=255)

                                                                                                                                                            cccccggaaaaaaTC‑AG‑GGGGGCGTC‑GGGA‑AATAAAC‑CG‑GG‑TGTTAGCCGTTTTCTGCAAGAGTTTT‑ACT‑GTGCAGTAGGCCC‑CAAC‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACAt                                                                      <  1:1642488/230‑1 (MQ=255)

                                                                                                                                                               ccTCGGAAAATC‑CA‑GAGGGCGTC‑GTGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTc                                                                    >  1:558594/1‑238 (MQ=255)

                                                                                                                                                               catggaaaaaGC‑CA‑GGGGGGGTA‑GGGA‑AATAAAG‑CC‑TG‑TGTTCGATATTGTCGGTAAGAAACTT‑ACG‑GGGCGGTAGGACG‑GCAG‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTcc                                                                   <  2:520463/233‑1 (MQ=255)

                                                                                                                                                                cctggAAAACC‑CC‑GGGGGGGGG‑GGGG‑AAATAAA‑CCGGG‑TGTTGCCCATTTTTTTTAAGAGACTT‑ACT‑GGGAGTTAGCACC‑GAAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTcc                                                                   <  1:944773/236‑1 (MQ=255)

                                                                                                                                                                 tCGGAAAA‑C‑CC‑GGGGGGGTCGGGGA‑AATAAAA‑CC‑GT‑TCTTAGCAGATTTCTTTAAGACATTT‑GCT‑GGGGGGAAGGCCC‑AAAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCt                                                                 <  2:635199/239‑1 (MQ=255)

                                                                                                                                                                 gggaaaaaCC‑CA‑GGGGGCGGC‑GGGA‑AATAAAC‑CG‑GG‑TGTTGGCCTTTTTCTGTAAGAGATTT‑ATG‑GTGAAGTGGGACC‑GAAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCt                                                                 <  1:1719984/235‑1 (MQ=255)

                                                                                                                                                                        aaatcaggggggCGGG‑GGGA‑AATAAAA‑CC‑GG‑TTTTACCTGTTTTCTGTCAGAGATTT‑AGT‑GTGCAGTAGGCCC‑GCAG‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCTATGta                                                            <  1:1476885/230‑1 (MQ=255)

                                                                                                                                                                         tC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCTATGtatta                                                         >  1:48741/1‑239 (MQ=255)

                                                                                                                                                                               gagGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTg                                                                                                  >  1:761002/1‑194 (MQ=255)

                                                                                                                                                                                agGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCTATGta                                                            >  1:908616/1‑231 (MQ=255)

                                                                                                                                                                                                            cgtTAGCCGTTTTCTGTCAGTGACTT‑ATT‑GTGCAGTAGGACC‑GCAA‑ACGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGACGGAAGAGCAGATCTTATCACGGTGTTCAATATAACCAGTACATGAAGTTAACGTAGCCAGTa                                                                                                                 >  2:732600/2‑155 (MQ=255)

                                                                                                                                                                                                             gtTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCTATGTATTATATATTAATTAATATTCATTGATTATATg                            >  1:1015909/1‑239 (MQ=255)

                                                                                                                                                                                                                      tttCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTcc                                                                   >  2:720810/1‑191 (MQ=255)

                                                                                                                                                                                                                      tttCTGTAAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTcc                                                                   <  1:720810/191‑1 (MQ=255)

                                                                                                                                                                                                                           gTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCTATGtatta                                                         >  1:753652/1‑196 (MQ=255)

                                                                                                                                                                                                                                         gtgggaaggaGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCTATGTATTATATATTAATTAATATTCATTGATTATATGAATATAAGCAGACTGCTCGTTAAGaa  <  2:1270297/230‑1 (MQ=255)

                                                                                                                                                                                                                                            tgCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCTATGTATtata                                                       >  1:225017/1‑183 (MQ=255)

                                                                                                                                                                                                                                                 tAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCTATGtatt                                                          >  1:383020/1‑175 (MQ=255)

GAATATAACAACATATGATGTTATGTAATGTGGAGGAAGATCACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGATGTAGTTATCAAATTG‑AATTTAAAGTGAAAATATTTTT‑AC‑GGGCGGGGG‑CAAGAAGG‑ACATAGAAACAAATACGCCCTCGGAAAATC‑CA‑GAGGGCGTC‑GGGC‑AATTAAA‑CC‑GG‑TGTTAGCCGATTTCTGTCAGAGACTT‑ACT‑GTGCAGTAGGACC‑GCAA‑CCGCCAATGATTTTAGAAATAGAAATTGCCGGGTGCAGCAGGTAGTCGTAAGAGCAGTTCTTATCACGGTTTTCAATATGACCAGTACATGCAGTTAACGTAGCCAGTACTGCACCTACCAGTGCAACTTTAATAAATTTGTTCATTTACATTCCCTATGTATTATATATTAATTAATATTCATTGATTATATGAATATAAGCAGACTGCTCGTTAAGAA  >  NC_007779/4140585‑4141042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`