Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_007779 4,290,120 T→A 11.5% Y281F (TAT→TTT)  acs ← acetate‑‑CoA ligase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077794,290,1200TA11.5% 232.4 / 2.6 81Y281F (TAT→TTT) acsacetate‑‑CoA ligase
Reads supporting (aligned to +/- strand):  ref base T (64/6);  new base A (3/7);  total (68/13)
Fisher's exact test for biased strand distribution p-value = 5.17e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGGTATAGAGAATATTGACCTGATGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGC  >  NC_007779/4289893‑4290347
                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                   
cGGTATAGAGAATATTGACCTGATGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGGAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGgta                                                                                                                                                                                                                          >  1:1855337/1‑239 (MQ=255)
          aaTATTGACCTGATGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGGAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGGAGTATgcagc                                                                                                                                                                                                                 >  1:259666/1‑238 (MQ=255)
             atTGACCTGATGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGcaca                                                                                                                                                                                                              >  1:1340578/1‑238 (MQ=255)
             atTGACCTGATGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGcaca                                                                                                                                                                                                              >  1:1368449/1‑238 (MQ=255)
             atTGACCTGATGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAAATATCACCCGGATGATAATCAAAGACATATTTAAAAGGCAGCGCCGCGGACAACAGAAAAACGCCGGGAGTATGTAGaaca                                                                                                                                                                                                              >  2:1638128/1‑238 (MQ=255)
             atTGACCTGATGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGGAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGcaca                                                                                                                                                                                                              >  1:1049104/1‑238 (MQ=255)
               tGACCTGATGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCt                                                                                                                                                                                                           >  1:926389/1‑239 (MQ=255)
               tGACCTGATGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGGATGCAGCACACCt                                                                                                                                                                                                           >  1:300695/1‑239 (MQ=255)
                 aCCTGATGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGcaca                                                                                                                                                                                                              >  1:761391/1‑234 (MQ=255)
                 aCCTGATGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCACATAACCGCCGGCAGTATGCAGCACACCctt                                                                                                                                                                                                         >  2:192222/1‑239 (MQ=255)
                  ccTGATGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGGAGTATGCAGCACACCtttt                                                                                                                                                                                                        >  1:385002/1‑239 (MQ=255)
                    tGATGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGGAGAAATCACCCGGATGATAAACAAAGACATATTTAAAGGGCAGCCCCGCCGACACCAAAAAACCCCCGGTAGTAAGAAGCACAACTTTTg                                                                                                                                                                                                       >  2:1415398/1‑238 (MQ=255)
                      aTGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCt                                                                                                                                                                                                    >  1:520061/1‑239 (MQ=255)
                      aTGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGGAGTATGCAGCACACCTTTTGGCt                                                                                                                                                                                                    >  1:849888/1‑239 (MQ=255)
                            gTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGGAAAAATTCCCCGGGTGGTAAACAAAGACATATTTTAAGGTCAGCGCCGCGGACACCAGATAAACCCCGGGAAGATGGCGCACCCCCTTTGGCCTAcccg                                                                                                                                                                                              >  2:597591/1‑237 (MQ=255)
                             tCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATgcagca                                                                                                                                                                                                                >  1:1578152/1‑220 (MQ=255)
                                    ccTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCg                                                                                                                                                                                      >  1:1603408/1‑239 (MQ=255)
                                     cggcgcCAGGCGGGCAGGCGCCGGCGAGTGGGGTACGCCTGCAAACACCGGCGGGGCCGCCCCGCGGGCGGGGGGGCGGTACAGAAAGTAACGGTGCCCGGCCCCCCAGCCAACATCGGCGGTCCACAAGTAGAAACCCCCCGGATAATAATCAAAAAAATATTAAAGGGGCGGCGCCGCTTACACCAGAAACCCGCCGGTAGAATGCAGCACACCTTTTGGCTTACCGGTAGAACCgg                                                                                                                                                                                     <  2:300695/237‑1 (MQ=255)
                                      tGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGgta                                                                                                                                                                                                                          >  1:1339968/1‑201 (MQ=255)
                                       gcgcCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGCAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAg                                                                                                                                                                                   >  1:194515/1‑239 (MQ=255)
                                       ccgcCATACGGGCGGGGGTCGGCCGGGTGGGTCCGCCTACAAACACCGGCGTGGCCCCCCCGCAGGCCGGCGGGCCGTACAGAAAGTAGCTGTGTCCGGCCCCCCACCCCACATGGGCGGTGCACAAGTAGATACCCCCCGGATAAAAATAAAAGAAATATTAAAAGGCCGGCGCCGCGTACACCAGAAAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAg                                                                                                                                                                                   <  2:520061/238‑1 (MQ=255)
                                           caaggggccAGGCGTCGGCCAGTGGGGTCCGCCTACAAACACCAGGGGGCGCGCCCCGCGGGCCGGGGGGCCGAACAGAAAAAACCTGTGCCCGGCCCCCAACCCCCCACCGGGGGTGCACCAGTAGATACCCCCCGGATAATAACCAAAGACATATTAAAAGGCCCGCGCCGCGTACACCAGAAAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGgtgt                                                                                                                                                                               <  2:194515/231‑1 (MQ=255)
                                             taggggCGGCCGTCGGCCAGTGGGGTACGCCTTAAACCATCGGGGTGGCCCCCCCGCAGGCCAGCGGGCCGTACAGAAAGTAACTGTGTCCGGCCCCCCAGCCCACATCGGCGGTGCACAAGTAGATATCCCCCGGATGAAAACCAAAGAAATTTTAAAGGGTCAGCGCCGCTTACACAAGAAAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTag                                                                                                                                                                             <  2:633646/236‑1 (MQ=255)
                                                  gCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCCCCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGGACACCAGATAACCGCCGGGAGTATGCAGCAAACCTTTTGGCTTAACGGTAGAACCGGCGGGGGAGAGAAt                                                                                                                                                                        >  1:517325/1‑239 (MQ=255)
                                                  gCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAAt                                                                                                                                                                        >  1:329882/1‑239 (MQ=255)
                                                     ggCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGGAGAGAATaaa                                                                                                                                                                     >  1:826163/1‑239 (MQ=255)
                                                                gTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAAACGGAGGGGTAGAGAATAAACAGCGGATCt                                                                                                                                                           >  1:298089/1‑238 (MQ=255)
                                                                 ttGGGTACGCCTTAAAACACCAGCGGGGCCGCACCGCAGGCCAGCGGGCCGTACAGAAAGTAACTGTGCCCGGTCCCCCAGCCCACATCGGCGGTGCACCAGTAGATACCCCCCGGATGATAATAAAAGACATTTTAAAAGGTCAGCGCCGCGTACACCAGAAAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCtt                                                                                                                                                          <  1:192222/238‑1 (MQ=255)
                                                                      tACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATg                                                                                                                                                                                                                     >  1:490440/1‑174 (MQ=255)
                                                                           cTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATg                                                                                                                                                                                                                     >  1:1247417/1‑169 (MQ=255)
                                                                              cAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGGAGAGAATaaa                                                                                                                                                                     >  1:247306/1‑214 (MQ=255)
                                                                                       gCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTgg                                                                                                                                   >  1:434090/1‑239 (MQ=255)
                                                                                          tGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGAGCACCAGTAGATATCACCCGGATGAAAATAAAAGACAAATTTAAAGGACAGCGCCGCGTACACCAGAAAAACCCCGGTAGTATGCCGGACACCTTTTGGCTTACCGGCAGAACCGGGGGGGTGGAGAATTAACACCGGATATGTGGGGTTAATCTCTTTCGCCTGGTGc                                                                                                                                >  2:1656370/1‑239 (MQ=255)
                                                                                           ggTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGt                                                                                                                                  >  1:1696499/1‑236 (MQ=255)
                                                                                           ggTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGt                                                                                                                                  >  1:905728/1‑236 (MQ=255)
                                                                                            gTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCCCCCGTAGATATCCCCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGGAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGCGCTg                                                                                                                              >  1:165825/1‑239 (MQ=255)
                                                                                                   cgcggcccggggggCGGTACAAAAAGACACTGGGCCCGGCCCCCCACCCCACAGCGGCGGTGCACCAGAAGATACCACCCGGATAATAAACAAAGAAATATGTAAAGGCCCGCCCCGCGTACACAAAATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGAtcgctc                                                                                                                       <  2:763944/228‑1 (MQ=255)
                                                                                                    gCAGGCCAGGGGGCCGTCCAGAAAGTACCGGGCCCCGGCCCCCCACCCACCTCCGGGGGTCCCCCAGAGGTAACCACCCGGATAAAAAAAAAAGACATATTAAAGGGCCGGCGCCGCGTACACCAAAAACCCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGAtcgctcg                                                                                                                      <  2:1541760/239‑1 (MQ=255)
                                                                                                    gCAGGCCAGCGGGCCGTACAGCAAGTACCTTTGTCCGCTCCCCCACCCCACACCGGCGGTGCACCAGTAGATACCACCCGGATAATAATCAAAGACATATTAAAAGGCCAGCGCCGCGTACCCCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGAtcgctcg                                                                                                                      <  1:1638128/239‑1 (MQ=255)
                                                                                                    gCAGCCGAGCGGGCCGTACAGAAAGTAACTGTGTCCGGCCACCCAGCCCACAGCGGGGGTGCACCAGTAGATATCCCCCGGATAATAATAAAAGACATATTTAAAGGTCAGCGCCGGTTACACGAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGAtcgctcg                                                                                                                      <  1:890472/239‑1 (MQ=255)
                                                                                                         ccAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCCCCCACCCCACATCGGGGGTGCCCCAGTAGATATCCCCCGGATGAAAATCAAAGAAATATTAAAAGGTCAGCGCCGCGTACACCAGAAAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTg                                                                                                                  <  1:354902/238‑1 (MQ=255)
                                                                                                           aGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGGGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTc                                                                                                               >  1:1419596/1‑239 (MQ=255)
                                                                                                               ggCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAAcc                                                                                                           >  1:904632/1‑239 (MQ=255)
                                                                                                                  cGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCacac                                                                                                                                                                                                             >  1:362524/1‑138 (MQ=255)
                                                                                                                   ggacggCAAGTAACTGGGTCGGGTCACCCACCCCACAGCGGCGGTCCACCAGTAGATATCCCCCGAATGATAATCAAAGACATATTAAAAGGCCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGt                                                                                                       <  1:146540/234‑1 (MQ=255)
                                                                                                                           aGTAACTGTGCCGGGTCCCCCACCCCACATCGGCGGTGCACCAGTAAATACCCCCCGGATGAAAATCAAAGACATTTTAAAAGCCCAGCGCCGCGTCCCCCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTgg                                                                                                                                   <  1:894475/203‑1 (MQ=255)
                                                                                                                            gTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGccacc                                                                                              >  1:1203170/1‑239 (MQ=255)
                                                                                                                              aaCTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCcaccac                                                                                            >  1:468367/1‑239 (MQ=255)
                                                                                                                                  gtgtCCGGTCCCCCACCCCACAGGGGCGGTGCACCAGTAGATACCCCCCGGATGATAATAAAAGACATATTTAAAGGTCAGCGCCGCGTACCCCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGt                                                                                        <  1:1415398/239‑1 (MQ=255)
                                                                                                                                   tgtCCGGTCACCCAGCCCACATCGGCGGTGGACCAATAGATATCACCCCGATGATAATTAAAGACATCTTTAAAGGGCACCGCCCCGTCCACCAGATAACCGCCGGTAGTATGCAGCACACCCTTTGGCTTACCGGTAGAACCGGGGGTGGAGAGAATAAACACCGGATCTTCGTCGCTCCTCTCTTCCGCCTCGTGCTGAGCGCTCGCCTGCGCAACCCGGTCGGCCCCCCACCgggc                                                                                       >  2:464434/1‑237 (MQ=255)
                                                                                                                                     tCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTcgc                                                                                     >  1:617945/1‑239 (MQ=255)
                                                                                                                                                  cccACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCa                                                                        >  1:352148/1‑239 (MQ=255)
                                                                                                                                                       aTCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGa                                                                                                                             >  1:996639/1‑181 (MQ=255)
                                                                                                                                                             cggTGCACCAGTAGATATCACCCGGATGGTAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACAACAGATAACCCCCGGGAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGGGGAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGGCGATCGCTCGCTTGCTCCACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAAtttt                                                               >  2:780963/1‑238 (MQ=255)
                                                                                                                                                             cggTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAAtttt                                                               >  1:734573/1‑238 (MQ=255)
                                                                                                                                                                 gCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGGGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCCGGTCGTGCCACCCCAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCg                                                           >  1:716664/1‑238 (MQ=255)
                                                                                                                                                                          gATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCt                                                 >  1:1699826/1‑239 (MQ=255)
                                                                                                                                                                             atCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATaaa                                                                                                                                                                     >  1:135400/1‑120 (MQ=255)
                                                                                                                                                                             atCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCa                                              >  1:1646774/1‑239 (MQ=255)
                                                                                                                                                                             atCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCa                                              >  2:613796/1‑239 (MQ=255)
                                                                                                                                                                               cACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTg                                                                                                                                 >  1:1785987/1‑154 (MQ=255)
                                                                                                                                                                               cACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCtgccgc                                            >  2:887726/1‑234 (MQ=255)
                                                                                                                                                                               cACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGt                                            >  1:668017/1‑239 (MQ=255)
                                                                                                                                                                               cACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGt                                            >  1:360788/1‑239 (MQ=255)
                                                                                                                                                                                 cccGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTa                                           >  1:420338/1‑238 (MQ=255)
                                                                                                                                                                                     gatgatAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTaccacc                                      >  2:35661/1‑239 (MQ=255)
                                                                                                                                                                                     gatgatAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGAGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTaacacc                                      >  1:80280/1‑239 (MQ=255)
                                                                                                                                                                                          tAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTc                                                                              >  1:2877/1‑194 (MQ=255)
                                                                                                                                                                                            aTCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGc                                >  2:204558/1‑238 (MQ=255)
                                                                                                                                                                                            aTCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGAGCCCTTCCTGCCATGCAATTTTCCGCCCAGTACGCTTCAGTACAACCACATGc                                >  2:1676432/1‑238 (MQ=255)
                                                                                                                                                                                                       atTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCt                                                                            >  1:118234/1‑183 (MQ=255)
                                                                                                                                                                                                       atTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGt                     >  2:1727617/1‑238 (MQ=255)
                                                                                                                                                                                                       atTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTg                    >  1:950371/1‑239 (MQ=255)
                                                                                                                                                                                                       atTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTg                    >  1:1453962/1‑239 (MQ=255)
                                                                                                                                                                                                        tttAAAGGTCAGCGCCGCGTACACCAGACAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTCGAACCGGCGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACAACAGGTCGCGCCCTCCCTGCCAGTCAATTTTCCCGCCAGTACGCCTCAGTACCCCCACATGCCCTACGccgttg                    >  2:1065605/1‑233 (MQ=255)
                                                                                                                                                                                                               gTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTGACGTTCgg            >  1:1074590/1‑239 (MQ=255)
                                                                                                                                                                                                                  aGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTGACGTTCGGGtt         >  1:1861852/1‑239 (MQ=255)
                                                                                                                                                                                                                  aGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTGACGTTCGGGtt         >  1:1818115/1‑239 (MQ=255)
                                                                                                                                                                                                                  aGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTGACGTTCGGGtt         >  1:1625159/1‑239 (MQ=255)
                                                                                                                                                                                                                  aGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGCTGACGTTCGGGtt         >  2:405999/1‑239 (MQ=255)
                                                                                                                                                                                                                         cgTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAgc  >  1:1058958/1‑239 (MQ=255)
                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                   
CGGTATAGAGAATATTGACCTGATGCTTGTCCACCACCTGCGCCATACGGGCAGGCGTCGGCCAGTTGGGTACGCCTTCAAACATCAGCGTGGTCGCACCGCAGGCCAGCGGGCCGTACAGCAAGTAACTGTGTCCGGTCACCCAGCCCACATCGGCGGTGCACCAGTAGATATCACCCGGATGATAATCAAAGACATATTTAAAGGTCAGCGCCGCGTACACCAGATAACCGCCGGTAGTATGCAGCACACCTTTTGGCTTACCGGTAGAACCGGAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGC  >  NC_007779/4289893‑4290347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: