| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 1,562,499 | T→A | 15.9% | I49F (ATC→TTC) | Y75_RS07840 ← | ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 1,562,499 | 0 | T | A | 15.9% | 133.0 / 2.3 | 58 | I49F (ATC→TTC) | Y75_RS07840 | ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base T (41/7); new base A (7/3); total (48/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.53e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCAGACTGCAGAGAGTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAG > NC_007779/1562268‑1562735 | gCCAGACTGCAGAGAGTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCg < 1:871627/239‑1 (MQ=255) tATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTTCACGATAGCATCGCTGGCGCGGTCAccc > 1:594476/1‑238 (MQ=255) tATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTTGCGCGGGCAccc > 1:1650275/1‑238 (MQ=255) gCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGGCCAGGCCCAGTTGCTGGCGAATATTTTCCACGATAACATCCCTGGCGCGGTCAccccccc > 1:1091565/1‑238 (MQ=255) aGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGGCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGGCACCCGCCCGTa > 1:626514/1‑238 (MQ=255) gCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAACTATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGGCCCCGGTGCTGGGCAATATTTTTCACCATAACATCGCCCGCGCGGTCATCCGCCCGTaa > 1:502395/1‑238 (MQ=255) gCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTTCACGATAGCATCGCTGGCGCGGTCCCCCGCCCGTaa > 1:1454609/1‑238 (MQ=255) tGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTGCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGcc > 1:347383/1‑239 (MQ=255) aTCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGGCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTTGCCCGGGCACCCCCCCGGAACCGCGCCGGATc > 1:1651666/1‑239 (MQ=255) aggggggCCAGCGGCAGAGCACCAAAAGCCAGCCCCAGCGCCGCCAGAAAAAATACCCCCAACTCTCCCAGCCCGGTCCCCCCGGTACGAGTGGAGGTCCCCAGGACACCATGAAGCAGGTCGCTGACGTGGAGTAAAAACTGTACACACGGGGGCTGGCCCCCCCCCGGTGGCGGGAGAATTTTTCCCCGGAAAGCCGCGCTGGCGCGGCCACCCGCCAGTAACCGCGCCGGATCAc < 2:801729/232‑1 (MQ=255) ccAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATc > 1:148269/1‑239 (MQ=255) agcagcagGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTGCCGTCCCCGTTTCTGGCGAAAATTTTTCACGAAAGCAACGCTGGCGCGGTCCCCCCCCAGAACCCCCGCCCGCACACCAGGGGTCac > 2:640662/1‑238 (MQ=255) aGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTaa > 1:368772/1‑238 (MQ=255) gCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGAcgc > 1:713919/1‑238 (MQ=255) gCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAAAATTTTTCACCATAGCATCGCTGGCGCGGGCCCCCCCCCGTAAACGCGCCGGGTCACCAGGGATCAGATGCGGGATAATAAAAGAAAACACGCAGACCCCCGCCACCCCCAGCA‑CCCCCCCCcaaca > 2:722336/1‑238 (MQ=255) ccGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGt > 1:824308/1‑239 (MQ=255) aaTGGATGTTCCCAGGTCCCCATGAAACAGGCCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTCCCACGATAGCATCGCTGGCGCGGt < 1:310171/122‑1 (MQ=255) tGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAg > 1:1481383/1‑239 (MQ=255) gATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGGCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGaa > 1:380378/1‑239 (MQ=255) tGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCCGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCCGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAgg > 1:1471573/1‑239 (MQ=255) tGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCCGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAgg > 1:666451/1‑239 (MQ=255) tGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAgg > 1:1857003/1‑239 (MQ=255) tGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGGCCCGGCCCCGTTTGTGGCGGATTCTTTCCACCAAAACATCGCTCGCGCGGGCCCCCGCCCGCAACCGCGCCCGGTCCCCCGGGATCCCAAGCGGGATAAGAAACCAAAACACCCAGGAGCCCCCCCCCCCCACCC‑CCCACCCCCAGCAACGTTCGCGGTAAAAACCTcccaaaa > 2:1615895/1‑234 (MQ=255) tGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGGCCAGTCCCAGTTGCTGGCGGATATTTTCCACCAAAGCCTCGCCGGGGCGGTCACCCGCCCGTAAACGCGCCCGCGCACCCGGGGACCGATGGGAGATAATAAACGAAAACACGCCGACGCACCCCACCCCCAGCA‑CCCACCCCCCAAGCCGTTGGC‑GGAAAAAACACCAAAAgg > 2:1807063/1‑239 (MQ=255) tcccaaGGTCACCAGGAAACGGGTCCCTGACGTAGCGGAAAACCGTTCCATACAGTGGCGGGCCCAGCCCCGGTTGCGGGAAATTTTTTCCCAGAATAGCACCGCGGGCGCGGCCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTc < 1:1806756/234‑1 (MQ=255) cccAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCCGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCAc > 1:76806/1‑239 (MQ=255) cccAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCCGTTGCTGGCGAATATTTTCCCCGAAAGCATCGCTGGCGCGGTCCCCCGcccg > 2:310171/1‑120 (MQ=255) gTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGC‑GCGTTGGC‑GTAAAATACTCCAGAAGGGCACGTTAtt > 1:1626656/1‑239 (MQ=255) ccATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATAACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGGTGGC‑GTAAAATACTCCAGAAGGTCACGTTAttt > 1:336309/1‑237 (MQ=255) cATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGGCACGTTATTTaa > 1:1184417/1‑237 (MQ=255) gggTCGCTGCGGTGGGGTTAAACCTTTACATACGGGGGCGGGTCCAGCCCCGGTTGCTGGAAAATTTTTCCCACGATAGCACCGCGGGCGCGGTCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGtat < 1:722336/238‑1 (MQ=255) gTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGGGAAAATTTTCCCCGATAGGATCGCTGGCGCGGGCACCCGCCAGGAAACCCGCCGGAGCACCCGGGGTCAGATGGGGGATAATAAACGGAAAACCCCCGACGCCCGCCACCACCAGCACCCAACCCCCAG‑AGCGTTGGC‑GTAAAATACCCCCGAAGGGCACGGTATTTTACCATGGttttg > 2:412987/1‑239 (MQ=255) gTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGGCCAGCCCCAGGTGCTGGGGAATATTTTCCACGATAGACTCGCTCGCGCGGTGACCCCCCAGGAACCGCGCCCGATCACCCCGGATCAGACTGGAGATAATAAACGTAAACACGCAGACGCCCGCCACCACCAACC‑ACCGCCCCCCACCGCGGTGGC‑GGAAAAAACCCCCCAAAGTCACGTTATTTACTCATGGtaatg > 2:983363/1‑239 (MQ=255) tAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGAAAGCATCGCTGGCGCGGTCACCCGCCAGGAACCGCGCCGGATCACCAGGGATCAGATTCGGGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGCAGGTCACGTTATTTACCCTTGTGTTTAATATTGaaa > 1:588619/1‑237 (MQ=255) gCGGTAAAACTGTACATACAGTGGCTGGGCCAGTCCCAGTTGCCGGCGAATATTTTCCACGATAACATCGCTGGCGCGGTCACCCCCCAGCAAACGCGCCCGGACACCCAGGGTCCGCTGCGAGATAATAAACGGAAACACCCCGACGCCCCCCCCCACGAGGC‑CCAACCCCCCGCAGCGGTGGG‑GCAAAAAACCCCCAAAAGCCACGTTATTTTCTCATCGGATTGATATTTAAAAc > 2:1222304/1‑238 (MQ=255) gCGGAAAACGTGAACAAACTGTGGCCGCCCCCGCCCCAGTGGCGGGACAATTTTCCCCGCGAAGGCAGCGGTGGGGCGCCCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGAGGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGAc < 2:76806/238‑1 (MQ=255) tGTAAATACAGTGGCGGGCCCTCCCCCGGTTGCGGGAAAAATTTCCCCGCGAAAGCCGCGGGGGCGCGCACACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCa < 1:1235538/239‑1 (MQ=255) tacatacaGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGGCACCCGCCAGTAACCGCGCCGGATCACCAGGGAt > 1:415156/1‑102 (MQ=255) acatacaGTGGCTGGTCCAGCCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCGGGCGCGGTCACCCGCCAGTAACCGCGCCgg < 1:1370800/89‑1 (MQ=255) aGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACCAAAGCATCGCTGGCGCGGTCACCCCCCCGTAACCGCGCCCGCACACCAGGGATCAGATGCGGGATAATAAACGTAATCACGCAGACGCCCGCCACCACCAGCA‑CCAGCCCCCCCCCGCGTTGGC‑GTAAAAAACCCCAGAAGGGCACGGTATTTTCTCATGGTATTGATATTTAAGACCTGTTTCAGCATGGGATTGa > 2:750527/1‑239 (MQ=255) ggCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAac > 1:941595/1‑238 (MQ=255) ggCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGGCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGGCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAac > 1:287038/1‑238 (MQ=255) ggCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACAAAAGCATCGCTGGCGCGGGCACCCGCCAGTAAACGCGCCGGGAAACCAGGGAACAGAAGCGGGAGAATAAAAGTAATCCAGCAGACCCCCGCCACCACAAGCA‑CCAGCCCACAGCAGCGTTGGC‑GGAAAATACTCCCGAAGGGCAAGTTATTTACTCCTGGTATTGATATTGAAGAACCGTTCCAGCATGGGATTGAac > 2:1610753/1‑238 (MQ=255) ggCTGGGCCCGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCCCCCCCCCGTAACCGCGCCGGAACACCAGGGATCAGATGCGAGATAATAAACGGAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAAAACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCACCCTGGGTGTGAac > 2:1737390/1‑238 (MQ=255) tGGTCCAGCCCCGTTTGCTGGAAAATATTTCCCACGATAGATTGGCGGGCGCGGCCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACaa < 1:479724/239‑1 (MQ=255) ggTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCCGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACcaa > 1:853993/1‑239 (MQ=255) gTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCCGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGtt > 1:1771717/1‑183 (MQ=255) tCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTc > 2:18473/1‑239 (MQ=255) tCCCACTTGCTGGCGAATATTTTCCACGCTAGCATCGATTGCCCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATAAGATGCGCGATAATAATCGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCCGCCCCCAGCAGCGTTGGC‑GCAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTCTTGATATTAACGACCTGCTCCAGCATGGGATTGATCaaaacatctttg > 2:1000190/1‑231 (MQ=255) aGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGtattgat > 1:826996/1‑192 (MQ=255) gTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGcc > 1:72113/1‑132 (MQ=255) gTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCAcc > 2:85328/1‑237 (MQ=255) tGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGt > 1:1414407/1‑239 (MQ=255) ggCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCAc > 2:453003/1‑63 (MQ=255) ggCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCAc < 1:453003/63‑1 (MQ=255) ggCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGt > 1:175243/1‑238 (MQ=255) tCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGtt > 1:694360/1‑239 (MQ=255) gATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAg > 1:227636/1‑239 (MQ=255) | GCCAGACTGCAGAGAGTATGCCCAGCGGGATGCCAATCAGGAGTGCCAGCAGCAGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCA‑CCAGCCCCCAGCAGCGTTGGC‑GTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAG > NC_007779/1562268‑1562735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |