Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_007779 249,538 T→G 20.9% H187P (CAC→CCC)  flhA ← flagellar type III secretion system protein FlhA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_007779249,5380TG20.9% 187.3 / 3.8 109H187P (CAC→CCC) flhAflagellar type III secretion system protein FlhA
Reads supporting (aligned to +/- strand):  ref base T (24/55);  new base G (25/5);  total (49/60)
Fisher's exact test for biased strand distribution p-value = 8.27e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 109 total aligned reads displayed.

TGGGTGAGCGGGTTACCCTGTGCTTTGTCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAGCACATACTGCTGGAAGGCAGCATCGGCGCTCAGGT  >  NC_007779/249301‑249772
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                            
tGGGTGAGCGGGTTACCCTGTGCTTTGTCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTg                                                                                                                                                                                                                                             <  1:1711316/239‑1 (MQ=255)
 gggTGAGCGGGTTACCCTGTGCTTTGTCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGc                                                                                                                                                                                                                                            <  1:693214/239‑1 (MQ=255)
     gAGCGGGTTACCCTGTGCTTTGTCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑c                                                                                                                                                                                                                                        <  1:615906/238‑1 (MQ=255)
     gAGCGGGTTACCCGGTGCTTTGTCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGCTCA‑GCGGAATGGTTTCCCAACTGCCCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGTTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑Ca                                                                                                                                                                                                                                       <  1:284290/239‑1 (MQ=255)
      tgCGGGTTACCCTCTG‑TTTTTCCCCCACGCC‑CCCCCGGTGTTCACCCGGGGTTTAAACGGATAGGCTCGATCC‑GCGGAATGTTTCCCCACCTGCCCTG‑CTCCCCGT‑TGTTTG‑CGGTGAGGGGGCGGGT‑CAGCGTTTCGGGGCTTTTCCCTCCCCCCCCCGCCGCCAGGGGCTGTTTGCTCCTCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑Ca                                                                                                                                                                                                                                       <  2:1288134/237‑1 (MQ=255)
      cgCGGGTTCCCCGTTGTTTTGCCCCCCC‑GCG‑CCCCCGTTTTGTACCCGGGGCTTAAACTGATGGGCCCGCTCA‑GCGGAATGTTTCCCCACCTGCCCTG‑CTGCTCGC‑TGGTTT‑CGATGATGGGGCGGGT‑CAGCTTTTCGGGGCTTTTCTCTCCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑Ca                                                                                                                                                                                                                                       <  2:1729325/237‑1 (MQ=255)
      aGCGGGTTACCCTGTGCTTTGTCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCgggca                                                                                                                                                                                                                                       >  2:1778981/1‑236 (MQ=255)
            ttACCCTGTGCTTTGTCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCAGAACAGCAAAATCGGCC‑GGGGCGG‑CGATCCC‑gg                                                                                                                                                                                                                               >  2:1350645/1‑239 (MQ=255)
                    tgCTTTGTCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCCAAAACGGCC‑GGGGCGG‑CATTccccgggacccc                                                                                                                                                                                                                         >  2:599533/1‑229 (MQ=255)
                     gCTTTGTCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCGG‑CCTTCCC‑GGGACCCCCg                                                                                                                                                                                                                       >  1:1161297/1‑238 (MQ=255)
                     gCTTTGTCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGGTTGCTCATCCCCCAGCCGGCAAAACCAAG‑CAGGGCGCTGAACCGCAAAAAAGGCA‑GGTGGGG‑GAGTACC‑GGGagcaccc                                                                                                                                                                                                                       >  2:1829082/1‑237 (MQ=255)
                     gCTTTGTCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGATTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑AGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGATGAACAGCAAAAACGGCA‑GGTGCGG‑CATTTCC‑GGGAACACCg                                                                                                                                                                                                                       >  1:1252875/1‑238 (MQ=255)
                      gctgtggccaca‑GGG‑CCACCGTTTTGTAACCGGGGGTTAAA‑TGGAAGGGGTGAACAGGGGGAATGGTTTCCCCACCGACCGG‑GTG‑GCGCGTGGTTTGGGGTGAGGGGGGGTGT‑GGGCGTTTCGGGGTTTTTCCTTCCCCCCCCCCCCGCGGGCGTTTTTTTCCCCCCCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGAAAAAACGGCA‑GGGGCGG‑CATTCCC‑GGTACCACCGc                                                                                                                                                                                                                      <  2:1558677/229‑1 (MQ=255)
                       tttGTCCACC‑‑GCGTCCACCTGTTTTAAACGGAGGCTTAACCTTATAGGTTCAAGCA‑GGGGAATGTTTTCCCACTTGCCCTG‑CTGCTCGT‑TGGTTC‑GGGGGATGGTGCGGTT‑CAGCGTTCCGAGGCTTTCTTCTTCCGCCCCCGCCGCCGGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTacccaacggc                                                                                                                                                                                                                    <  2:1784346/239‑8 (MQ=255)
                         tGTCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑CGGACCACCGCCAGc                                                                                                                                                                                                                  >  1:1093407/1‑239 (MQ=255)
                         tGTCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TAGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGGAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCGG‑GATACCC‑CGGACCACcccccc                                                                                                                                                                                                                   >  2:849879/1‑236 (MQ=255)
                           tCCACCA‑GGC‑CCCCCTGTTTGAAGCCGGGGCTTAAACTGATAGGCTGGATCG‑GGGTAAGGGTTCCCCACGTGCCCTG‑CTCGTGGG‑TGGTTG‑CGGGGTGGGTGGGGTT‑CGGCTTTTCGGGGCTTTTCTCTCCCGCCCCCCCCGCCGGCGGCTTTTTGCTCCCCCCCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCAc                                                                                                                                                                                                                <  2:745975/239‑1 (MQ=255)
                           tCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCAc                                                                                                                                                                                                                <  1:138383/239‑1 (MQ=255)
                           tCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCGG‑CATTCCC‑GGTACCACCGCCAGCa                                                                                                                                                                                                                 >  1:1063070/1‑238 (MQ=255)
                              acca‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCGG‑GCTTTCC‑GGTACCAACCCCAGCACgca                                                                                                                                                                                                             >  1:94639/1‑237 (MQ=255)
                                          ccaGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACAAAATcccc                                                                                                                                                                                                   >  1:1212689/1‑238 (MQ=255)
                                             gttggaaaCCGGGGTTAAAACTGAGAGGCTGAACCG‑GCGG‑ATGGTTTCCCCACCGCCCTGTCTGCGCGG‑T‑GTTT‑TGGGGGTGGGGGGGGTGCGGCTTTTGGGGGTTTTCCTCTCCCGCCCCCGCCCCCGGGGGTTTTTGGCCCCCCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTg                                                                                                                                                                                                <  2:1868393/233‑1 (MQ=255)
                                             gTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑GATTCCC‑GGTACCCCCGCCCGCACGAACATAAACCCGGTg                                                                                                                                                                                                >  1:1128785/1‑239 (MQ=255)
                                              tttGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑g                                                                                                                                                                                                                                <  1:8486/206‑1 (MQ=255)
                                                tGTAACCGAGGCTTAAACTGATAGGCTGGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTCCCGCCCCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCg                                                                                                                                                                                             <  1:751692/239‑1 (MQ=255)
                                                        aGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCCGCGGCTGTTTGCTCATCCGCCAGCCGGTACAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCGGCCATGCCG‑GGCCCCACCCCCACCACGAA‑ACAAAACCGGGGGCGGTGTaggg                                                                                                                                                                                     >  2:925283/1‑237 (MQ=255)
                                                          gCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCGG‑CATTCCC‑GGTACCACCGCCAGCCCGAACATAATCCCCGGGGCGGTGGAGAGc                                                                                                                                                                                    >  1:880556/1‑238 (MQ=255)
                                                                aCTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGCCCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTCCCGCCTCCGCCGCCGGCGGCTGTTTGCTCACCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACg                                                                                                                                                                             <  1:1821812/239‑1 (MQ=255)
                                                                  tGATAGGCTCGATCA‑GCGGAATGGTTCCCCACCTGCCCTG‑CGGCTCGC‑TGGTTT‑CGGTGAGGGTGCGGGT‑CAGCGTTTCGAGGTTTTTCTCTCCCCCCCCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACggg                                                                                                                                                                           <  1:76927/239‑1 (MQ=255)
                                                                    aTAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGGGGAGAGCACCGACGGGCt                                                                                                                                                                         >  1:1447869/1‑239 (MQ=255)
                                                                    aTAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCCGGGGCGGGGTAGAGCACCGACGGGCt                                                                                                                                                                         >  1:1280556/1‑239 (MQ=255)
                                                                         cTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAAACCCGGTGGCGGGGTGTAGCACCGCCAGGCTTggc                                                                                                                                                                     >  2:863668/1‑236 (MQ=255)
                                                                              tCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTCAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCAGGGGGGGG‑CATCCCC‑GGTACCCCCCCCGGCCCGAACAGATCCCGGGGGGGGGGGTGGAGCCCCCACGGGCtgccccgcc                                                                                                                                                                 >  2:1415953/1‑230 (MQ=255)
                                                                              tCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGGGTAGAGCACCGACGGGCTTGCcagca                                                                                                                                                                 >  1:1413065/1‑237 (MQ=255)
                                                                                   cGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGGACCACCGCCAGCACGAACATAATCCCGGTGGCGGGGTAGAGCACCCACGGGCTTGCCAGCAGCTGGt                                                                                                                                                           >  1:433806/1‑239 (MQ=255)
                                                                                    ggAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGGACCACCGCCAGCACGAACATAATCCCGGTGGCGGGGTAGAGCACCGACGGGCTTGCCAGCAGCTgggt                                                                                                                                                          >  1:423104/1‑237 (MQ=255)
                                                                                        tGGTTTCCCACCTGCCCTG‑CTGCTCGC‑GGGTTT‑CGGTGAGGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTCCCGCCTCCGCCGCCAGCGGCTGTTTGCTCACCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGc                                                                                                                                                      <  1:1282453/239‑1 (MQ=255)
                                                                                           ttccccAACTGCCCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCg                                                                                                                                                                                             <  1:1707085/194‑1 (MQ=255)
                                                                                             tCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCCAG‑CAGGGCGCTGAACAGCAAAAACGGCAGGGGGGGG‑AATTCCC‑GGAACC‑CCCCCCGCGCCAACATAAACCCGGGGGGGGGGCGTAGCACCCGCCGGGTTGCCCCCGGCCGGGTACGCGCGt                                                                                                                                                  >  2:343818/1‑238 (MQ=255)
                                                                                             tCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCCCCAGCACGAACATAATCCCGGTGGCGGGGTAGAGCACCGACGGGCTTGCCCGCCGCTGGTTACGCCCGTc                                                                                                                                                 >  1:1613833/1‑239 (MQ=255)
                                                                                                    tGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGGGGCGGGGTAGAGCACCGACGGGCTTGCCAGCAGCTGGGTACGCACGTCATGGGCg                                                                                                                                          >  1:750784/1‑239 (MQ=255)
                                                                                                     gACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCGG‑CATTCCC‑GGTACCACCGCCAGCACGCACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCCCGTCATGGGCGa                                                                                                                                         >  1:197388/1‑239 (MQ=255)
                                                                                                         tg‑ctgcTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCGG‑CATTCCC‑GGGACCACCGCCACCACGAACATAATCCCGGGGGCGGGGTAGAGCACCGACGGGGTTTCCCGCAGCTGGTTACCCCCGTCATcggggcact                                                                                                                                      >  1:1218000/1‑232 (MQ=255)
                                                                                                            ctgctCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGGGGAGAGCACCGACGGGCTTGCCAGCAGCTGGGTACGCACGTCATGGGCGATATCg                                                                                                                                    >  1:1454352/1‑238 (MQ=255)
                                                                                                            ctgctCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGGGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGGTACGCACGTCATGGGCGATATCg                                                                                                                                    >  1:300138/1‑238 (MQ=255)
                                                                                                                 cGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGGGGCGGTGTAGAGCACCGACGGGGTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTg                                                                                                                              >  1:1799847/1‑239 (MQ=255)
                                                                                                                 cGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑CGTACCACCGCCCGCACGAACATAATCCCGGGGGCGGTGGAGAGCACCCACGGGCCTGCCAGCAGCTGGTTACGCCCGTCATGGGCGATATCGCCGTTg                                                                                                                              >  1:932075/1‑239 (MQ=255)
                                                                                                                   gcgggTTT‑GGGTGATGGTGCGGGT‑CAGCGTTCCGAGGCTTTCCTCTTCGGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCAc                                                                                                                                                                                                                <  1:1340366/153‑1 (MQ=255)
                                                                                                                             ggTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTTTTTGCTCACCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGAcg                                                                                                                     <  1:941209/238‑1 (MQ=255)
                                                                                                                                  tGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCCCCGCCAGCACGAACATAATCCCGGTGGCGGGGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCggggg                                                                                                               >  1:336128/1‑237 (MQ=255)
                                                                                                                                       cGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGGGGCGGGGTAGAGCACCCACGGGCGTGCCAGCAGCTGGGTACGCACGTCCATGGCGATATCGCCGTTGTCGCTCGCGCggggggcgga                                                                                                          >  2:1640427/1‑232 (MQ=255)
                                                                                                                                              gcctttccGAGGTTTTTCTCTCCCGCCCCCGCCGCCGGCGGTTGTTGGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATcgc                                                                                                    <  1:952114/232‑1 (MQ=255)
                                                                                                                                                    tCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATcgccgccgc                                                                                              >  1:1691083/1‑239 (MQ=255)
                                                                                                                                                     cGAGGCTTTTCTTTTCCCCCTCCCCCGCCAGCGGCTGTTTGCTCACCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCcgcg                                                                                             <  1:726308/239‑1 (MQ=255)
                                                                                                                                                       aGGCTTTTCTCTTCCCCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCcagcag                                                                                                                                                                <  1:1149078/170‑1 (MQ=255)
                                                                                                                                                        ggCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCGG‑CCTTCCC‑GGGACCACCGCCCGCACCAAAATAATCCCCGGGGCGGTGGAGAGCACCGCCGGGCTTGGCCGCAGCTGGTTACGCCCGGCATGGGCGGAAACGCCGGTGTCGCCGGCCCGGGGGTCCATAAACGCCCCCCCgggg                                                                                          >  2:697449/1‑237 (MQ=255)
                                                                                                                                                          cTTTTCTCTCCCGCCCCCGCCGCCAGCGGCTTTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGt                                                                                                                                                           <  1:589689/172‑1 (MQ=255)
                                                                                                                                                             ttCTCCTCCGCCTCCGCCGCCGGCGGCTGTTGTCTCTTCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGagag                                                                                     <  1:1491702/239‑1 (MQ=255)
                                                                                                                                                                tctcCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCCCCAGCCGGTAAACCCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGagcag                                                                                  <  1:1350645/239‑1 (MQ=255)
                                                                                                                                                                cctcccgccccccccGCCAGCGGCTGTTTGCTCACCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGagcag                                                                                  <  1:829344/235‑1 (MQ=255)
                                                                                                                                                                  tcccgccccggccGCCGGCGGTTTTTTGCTCACCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAgcagca                                                                                <  1:103436/237‑1 (MQ=255)
                                                                                                                                                                  tcccgcccccgccGCCAGCGGCTGTTGCCACACCCGCCAGCCGGTAAACCCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAgcagca                                                                                <  1:973377/237‑1 (MQ=255)
                                                                                                                                                                  tcccccctccgcgGCCAGGGGCTGTTTGCTCACCCCCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAgcagca                                                                                <  1:1182798/234‑1 (MQ=255)
                                                                                                                                                                  tcccccccccgccgccgGGGGCTGTTTGCTCACCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAgcagca                                                                                <  1:710306/231‑1 (MQ=255)
                                                                                                                                                                   tccgcctccgccGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCGG‑CATTCCC‑GGGACCCCCGCCAGCACGAACACAATACCGGTGGCGGGGTAGAGGACCGAAGGGGTTGCCCGCAGCTGGTTAAGCACGCCATGGGCGATACCGCCCGTGTCGCACGCCCGGGGGGAGGTAATCGCCGCCCGGGGGGAGggcaggcg                                                                               >  2:1044135/1‑236 (MQ=255)
                                                                                                                                                                    ccgcctccgccGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGGGCGG‑CATTCCC‑GGGACCACCCCCCGCACGCACATAAACCCGGGGGCGGGGTGGAGCACCCACGGGCTTGCCACCCGCCGGGTAcccccggc                                                                                                                                                 >  2:589689/1‑165 (MQ=255)
                                                                                                                                                                       cctccgccGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCagggaa                                                                           >  1:1768061/1‑239 (MQ=255)
                                                                                                                                                                       cctccgccGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGGGGGGAGCAGCagggga                                                                           >  1:271550/1‑237 (MQ=255)
                                                                                                                                                                            gccgccGGCGGGTGTTTGCTCACCCCCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCG‑GGTGCGG‑CATTCCG‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGAt                                                                      <  1:1062111/239‑1 (MQ=255)
                                                                                                                                                                                   gCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTgcgc                                                                >  1:174474/1‑238 (MQ=255)
                                                                                                                                                                                      gCTGTTTCCCCACCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGccac                                                             <  1:1541704/238‑1 (MQ=255)
                                                                                                                                                                                                     gCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATg                                             <  1:1437756/239‑1 (MQ=255)
                                                                                                                                                                                                       cAGCCGGTAAACCCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGT‑CATCCCC‑GGTCCCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGt                                           <  1:509342/239‑1 (MQ=255)
                                                                                                                                                                                                       cAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGGGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGGGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGAAgg                                            >  1:1418666/1‑238 (MQ=255)
                                                                                                                                                                                                          cccgttaacccACG‑CAGGTCGCTAACCACCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCGCCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGtcat                                        <  2:478158/230‑1 (MQ=255)
                                                                                                                                                                                                          ccGGTAAAACAGAG‑CACGGCCCTGAACATAAAAAACGGCG‑GGGGCTG‑CATCCCC‑GTGTCCACCGCCAGCCCGAACATAATCCCGGTGGCGGGGTAGTGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATGATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCGGCGCCCCCAGGCCGTCGCCGATGGtcat                                        <  2:1252875/239‑1 (MQ=255)
                                                                                                                                                                                                          ccGGAAAACCCAAG‑CAGGGCGCTAAACAGCAAAACCGGCG‑GGTG‑GG‑CCTTCCCGGGTCCCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGtca                                         <  2:825816/238‑1 (MQ=255)
                                                                                                                                                                                                          ccGATAAAACCAGG‑CGGGGCGTGGAACAGAAAAAACGGCG‑GGGGCGG‑CTTCCCC‑GGTACCCCCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGtca                                         <  2:932075/238‑1 (MQ=255)
                                                                                                                                                                                                           cGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAACCGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCCCCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGGCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGtcat                                        <  1:156121/238‑1 (MQ=255)
                                                                                                                                                                                                           cGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGtcatc                                       <  1:927646/239‑1 (MQ=255)
                                                                                                                                                                                                           cGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGtcat                                        <  1:487448/238‑1 (MQ=255)
                                                                                                                                                                                                            cggaaaaCCAAGCCAGGGCGCGAAACAGCAAAAACGGCG‑GGTGCGG‑CATTCCG‑GGTCCCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGtcatc                                       <  2:271550/236‑1 (MQ=255)
                                                                                                                                                                                                              tAAAACCACA‑CAGGGCGCTGAACAGCAAAAACGACA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTTGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAg                                     <  1:350588/238‑1 (MQ=255)
                                                                                                                                                                                                               aaaaCCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAGca                                   <  1:849879/239‑1 (MQ=255)
                                                                                                                                                                                                                 acccAGG‑CGGGGCGCTAAACAGAAAAACCGGGG‑GGTGGGG‑CATTCCC‑GGTCCCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCAGCGCCACCAGGCCGTCGCCGATGGTCATCAGcaca                                 <  2:336128/237‑1 (MQ=255)
                                                                                                                                                                                                                 acccAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAGcaca                                 <  1:1829082/237‑1 (MQ=255)
                                                                                                                                                                                                                    cAAG‑CGGGGCGCTAAACAGAAAAAAGGGCG‑GGGGGGG‑CATTCCC‑GGCCCCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAGCACATAc                              <  2:1768061/239‑1 (MQ=255)
                                                                                                                                                                                                                      aG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGCGCAGCCGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAGCACATAcc                             >  1:989393/1‑237 (MQ=255)
                                                                                                                                                                                                                      aG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAGcaca                                 <  1:810966/234‑1 (MQ=255)
                                                                                                                                                                                                                         cAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGGGGAGAGCAGCAGGGGAGGGATCTGCGCCACCAGGCCGTCGCCGGTGGTCATCAGCACATAct                             >  1:267952/1‑236 (MQ=255)
                                                                                                                                                                                                                         cAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGGGACGATAATCGCCGCCGCGGTGGGGAGCAGCagg                                                                              >  1:65769/1‑187 (MQ=255)
                                                                                                                                                                                                                                         aaaaaCGGCA‑GGTGCGG‑CATTCCC‑GGTACCCCCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAGCACATACTGCTGGAAGGCAGCATc             <  1:1594146/236‑1 (MQ=255)
                                                                                                                                                                                                                                         aaaaaCGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAGCACATACTGCTGGAAGGCAGCATc             <  1:697449/236‑1 (MQ=255)
                                                                                                                                                                                                                                            accggcg‑gGGGGGG‑CATCCCC‑GGTCCCCCCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAGCACATACTGCTGGAAGGCAGCATCGGCGCt       <  2:1413065/237‑1 (MQ=255)
                                                                                                                                                                                                                                            aaCGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAGCACATACTGCTGGAAGGCAGCATCGGCGCt       <  1:1044135/239‑1 (MQ=255)
                                                                                                                                                                                                                                            aaCGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAGCACATACTGCTGGAAGGCAGCATCGGCGCt       <  1:1640427/239‑1 (MQ=255)
                                                                                                                                                                                                                                             aCGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGGGTAGAGCACCCACGGGCTTTCCAGCAGCTGGGTACGCCCGTCATGGGCGATATCCCCGGTGTCGCTGACGCGGGGGACGATAATCGCCGCCGCGGTGGGGGGCAGCAGGGAAAGGGACCGCGCCACCAGGCCGCTCCCGGCGGGCATCAGCACCAACTTCCGGAAGggagccaccgcggc       >  2:531681/1‑229 (MQ=255)
                                                                                                                                                                                                                                                  a‑GGTGGGG‑CTTTCCC‑GGTCCCTCCGCCAGCACGAACATAATCCCGGTGGGGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAGCACATACTGCTGGAAGGCAGCATCGGCGCTCAGGt  <  1:1055373/238‑1 (MQ=255)
                                                                                                                                                                                                                                                  a‑GGTGCGG‑CATTCCC‑GGTCCCGCCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAGCACATACTGCTGGAAGGCAGCATCGGCGCTCAGGt  <  1:40419/238‑1 (MQ=255)
                                                                                                                                                                                                                                                  a‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAGCACATACTGCTGGAAGGCAGCATCGGCGCTCAGGt  <  1:347738/238‑1 (MQ=255)
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                            
TGGGTGAGCGGGTTACCCTGTGCTTTGTCCACCA‑GCG‑CCACCAGTTTGTAACCGAGGCTTAAACTGATAGGCTCGATCA‑GCGGAATGGTTTCCCAACTGACCTG‑CTGCTCGC‑TGGTTT‑CGGTGATGGTGCGGGT‑CAGCGTTTCGAGGCTTTTCTCTTCCGCCTCCGCCGCCAGCGGCTGTTTGCTCATCCGCCAGCCGGTAAAACCAAG‑CAGGGCGCTGAACAGCAAAAACGGCA‑GGTGCGG‑CATTCCC‑GGTACCACCGCCAGCACGAACATAATCCCGGTGGCGGTGTAGAGCACCGACGGGCTTGCCAGCAGCTGGTTACGCACGTCATGGGCGATATCGCCGTTGTCGCTGACGCGGGTGACGATAATCGCCGCCGCGGTGGAGAGCAGCAGGGAAGGGATCTGCGCCACCAGGCCGTCGCCGATGGTCATCAGCACATACTGCTGGAAGGCAGCATCGGCGCTCAGGT  >  NC_007779/249301‑249772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑