| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | 3759688 = | 181 (1.170) | 4 (0.030) | 4/362 | NT | 2.3% | coding (495/1074 nt) | recF | DNA replication/repair protein RecF |
| ? | NC_007779 | 3759770 = | 161 (1.100) | coding (577/1074 nt) | recF | DNA replication/repair protein RecF | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_007779/3759933‑3759688‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctggcgcGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTGGAAGATACCTTATCGC > NC_007779/3759770‑3760004 GTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGAGATGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTGGTAACGAGTCA > 2:75404/1‑238 GGTTAGCTGGCGATCGGTTCCAAAATTACGTTCCAGCAACTCAGCATAGACTGTCTCTTTCTCCCCGCCGCGCTGGAGAGAGAAAGTCAGAGAAACCTCAGAGAGAAATTGTTTACAGGGATCGGCCATATCGGCGGGGATACGGGGGCTATACTCCGCGCGCCTGGTGCTGATTTGCTCCGCCAGCGGGAGCAGCTCTATATCCGACGGGCGTAGCTGTTCGTAACGTGTCACCTGGC < 2:564151/239‑1 TTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCG < 1:668016/238‑1 cgaGCGATCGCGATCAAAATTACTTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGACAAAGTCAGTGAAAACTCAGGGAGAAACTGCTTACAGGTAGCAGCCATATCGGCCACGATACCGGCCCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGCATCAGCACTTTACCCCACGGGCGGAGCTGTTCGTCACTCTTCACCTGGCGaagc > 2:1625357/4‑234 CTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAACTTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCCGGTGCTGATTTGCTCCGCCAGCGGGATCCGCTCGTTCTCCCACGGGCGTATCTGTTCGAAACGTTGCACCTGCCGCcgc > 2:1170779/1‑235 CTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCTCCCGGGCGTAGCTGTTCGTAACGTGTCCCCTGGCtccgc > 2:841236/1‑233 CTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCG > 1:2020955/1‑234 CTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTAAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCGCGG > 1:564151/1‑239 CAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATA < 1:1177959/239‑1 GCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTAAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCG > 1:1307680/1‑205 CCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCCGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACC > 1:2088489/1‑168 gctGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAG < 1:1737255/235‑1 CTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGA < 1:165122/102‑1 CTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGA > 2:165122/1‑102 aaatccgagCCTGGCGCGCTGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTGGA < 2:1731410/229‑1 ACCTGGGGGGCGGGGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCGCCCTGAGTTTTCTCTGACTGTCTCTTTCCAGCGCTGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGGAATTTTGAACGCGATCGCCAGCTAACCTACGCCGCGCACGGCCCGCACAAAGCGGACTTCCGCATTCGCGCCGACGGTGGGCCGGTGGAAGATACCTT < 2:1960115/239‑1 ACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTGGAAGATACCTT < 1:1086327/239‑1 GGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTGGAAGATACCTTATC > 1:574455/1‑238 GGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACCGGGCGCCGGTGGAACAAACCTTATC > 2:866205/1‑238 GGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGA < 2:1455462/111‑1 GGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGA > 1:1455462/1‑111 GCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTGGAAGATACCTTATCGC > 1:1287893/1‑239 GTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_007779/3759933‑3759688‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctggcgcGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTGGAAGATACCTTATCGC > NC_007779/3759770‑3760004 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |