New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 = 13010400 (0.000)114 (0.870)
+TTAATTCCACTGCCTTTGGTAGAGGAAA
60/326 NT 100% intergenic (+218/‑45) ychE/Y75_RS06530 NAAT family transporter YchE/IS3‑like element IS2 family transposase
?NC_007779 = 4311564 NA (NA)pseudogene (914/921 nt) alsK allose kinase

Only 100 of 165 total aligned reads displayed.

CTGCTTAATTAATTCCTTTCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGC  >  NC_007779/1300811‑1301277
                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                             
cTGCTTAATTAATTCCTTTCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattcca                                                                                                                                                                                                                                      <  1:1715483‑M1/239‑10 (MQ=255)
cTGCTTAATTAATTCCTTTCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattcca                                                                                                                                                                                                                                      <  2:1339532‑M1/239‑10 (MQ=255)
cTGCTTAATTAATTCCTTTCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattcca                                                                                                                                                                                                                                      <  2:1649735‑M1/239‑10 (MQ=255)
        ttaattCCTTTCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgccttt                                                                                                                                                                                                                              >  1:1983293‑M1/1‑222 (MQ=255)
             tCCTTTCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTGATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAACTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGTGCTTGCTGAAGAATAATTGAAATGATATAAttaattccactgcctttggtag                                                                                                                                                                                                                         >  2:439913‑M1/1‑217 (MQ=255)
                 ttCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagagga                                                                                                                                                                                                                     <  2:1983293‑M1/239‑27 (MQ=255)
                 ttCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagagga                                                                                                                                                                                                                     >  2:2113611‑M1/1‑213 (MQ=255)
                 ttCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagagga                                                                                                                                                                                                                     <  1:1600355‑M1/239‑27 (MQ=255)
                  tCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattcca                                                                                                                                                                                                                                      <  1:939811‑M1/221‑10 (MQ=255)
                                gCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaag                                                                                                                                                                                                       <  1:1710772‑M1/238‑41 (MQ=255)
                                    ccATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcg                                                                                                                                                                                                  >  1:1446685‑M1/1‑194 (MQ=255)
                                    ccATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGAGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCATTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcg                                                                                                                                                                                                  >  1:848546‑M1/1‑194 (MQ=255)
                                         cTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataa                                                                                                                                                                                             >  2:1049384‑M1/1‑189 (MQ=255)
                                         cTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagagga                                                                                                                                                                                                                     >  2:1587171‑M1/1‑189 (MQ=255)
                                                      gTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattct                                                                                                                                                                                >  2:1891403‑M1/1‑176 (MQ=255)
                                                             tttttACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaagtaagttgcgaataagcggggaaattcttctcggc                                                                                                                                                                         >  2:1218776‑M1/1‑169 (MQ=255)
                                                                 tACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctt                                                                                                                                                                                                                               >  2:611926‑M1/1‑165 (MQ=255)
                                                                    gttgATCCCACGGACTTATCAAAAGCAAAAGGAGTAGGTAGAAATATTCTTCTCAAATTACAGTTAGTTATAAGTATTTCCTTAACTGCTTCTCCACACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgac                                                                                                                                                                     <  2:1793667‑M1/235‑75 (MQ=255)
                                                                     ttGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAACAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATACTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaatttcttctcggctgactcag                                                                                                                                                                 >  2:363371‑M1/1‑161 (MQ=255)
                                                                              cgcAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt                                                                                                                                                           >  1:1793667‑M1/1‑152 (MQ=255)
                                                                               gcAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat                                                                                                                                                        <  1:1534593‑M1/238‑88 (MQ=255)
                                                                               gcAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat                                                                                                                                                        <  1:319684‑M1/238‑88 (MQ=255)
                                                                                cAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCGCCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaagtccactgcctttggtagagga                                                                                                                                                                                                                     <  2:190258‑M1/176‑27 (MQ=255)
                                                                                cAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagagga                                                                                                                                                                                                                     >  1:190258‑M1/1‑150 (MQ=255)
                                                                                    tATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt                                                                                                                                                   <  1:2051226‑M1/238‑93 (MQ=255)
                                                                                                aagGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccg                                                                                                                                      >  1:489644‑M1/1‑134 (MQ=255)
                                                                                                          tAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttct                                                                                                                             <  2:489644‑M1/238‑115 (MQ=255)
                                                                                                                 atTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATAATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa                                                                                                                     >  1:2089522‑M1/1‑117 (MQ=255)
                                                                                                                 agtcttctcaAATACAAGTTTGTTATTAGGATTACCTTAACTGCTTGTCCGCACAATCATGTTATTTTTGCCACATAATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcagccgactccgtcagttcatttcttcatgtttgagccgattttttcgcccataca                                                                                                                     <  2:584622‑M1/237‑123 (MQ=255)
                                                                                                                   tcttctCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagagga                                                                                                                                                                                                                     <  2:1215182‑M1/141‑27 (MQ=255)
                                                                                                                    cttctCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccact                                                                                                                                                                                                                                    >  2:861695‑M1/1‑114 (MQ=255)
                                                                                                                     ttctCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcc                                                                                                                 <  1:2095236‑M1/239‑127 (MQ=255)
                                                                                                                       ctcAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAACTGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaatttcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcctt                                                                                                               >  2:728762‑M1/1‑111 (MQ=255)
                                                                                                                       ctcAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcctt                                                                                                               >  1:954056‑M1/1‑111 (MQ=255)
                                                                                                                       ctcAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcgggg                                                                                                                                                                                       <  1:1479730‑M1/167‑57 (MQ=255)
                                                                                                                          aaaTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaa                                                                                                            <  1:1049384‑M1/239‑132 (MQ=255)
                                                                                                                                      gttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctt                                                                                                                                                                                                                               <  1:1656798‑M1/112‑17 (MQ=255)
                                                                                                                                      gttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctt                                                                                                                                                                                                                               >  2:1656798‑M1/1‑96 (MQ=255)
                                                                                                                                                 ttCCTTAACTGCTTGTCCTCACCATCATGTTATTTTGGTCACATTATAATCCTGGGCTTGCTGACGAATAATTTAAATGATATTAttaattccactgcctttggtagaggacagtgctaaggaagctgcgactaagcggggaaattctactcggctgactcagtcatttcatacgttcacgcatgagacgcgtttttatcacgtaaatgccttgactcagcctattaagaccgtttat                                                                                      >  2:1921871‑M1/1‑85 (MQ=255)
                                                                                                                                                 ttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGACGAATAATTGAAATGATATTAttaattccactgcctttggtagcggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtaatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatccgcctatttagaccgtttct                                                                                      >  2:695675‑M1/1‑85 (MQ=255)
                                                                                                                                                 ttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgactcagcctatttagaccgtttct                                                                                      >  2:1451800‑M1/1‑85 (MQ=255)
                                                                                                                                                 ttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttct                                                                                      >  1:1124665‑M1/1‑85 (MQ=255)
                                                                                                                                                 ttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttct                                                                                      >  1:2103226‑M1/1‑85 (MQ=255)
                                                                                                                                                 ttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttct                                                                                      >  1:378976‑M1/1‑85 (MQ=255)
                                                                                                                                                 ttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcaggcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttct                                                                                      >  2:1411414‑M1/1‑85 (MQ=255)
                                                                                                                                                 ttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaa                                                                                                                                                                                                                   >  2:1501011‑M1/1‑85 (MQ=255)
                                                                                                                                                 ttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagagga                                                                                                                                                                                                                     <  1:662898‑M1/111‑27 (MQ=255)
                                                                                                                                                 ttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagagga                                                                                                                                                                                                                     >  2:662898‑M1/1‑85 (MQ=255)
                                                                                                                                                 ttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttgg                                                                                                                                                                                                                            >  1:1470048‑M1/1‑85 (MQ=255)
                                                                                                                                                 ttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattcca                                                                                                                                                                                                                                      <  1:434579‑M1/94‑10 (MQ=255)
                                                                                                                                                   ccTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcg                                                                                   <  1:687311‑M1/239‑157 (MQ=255)
                                                                                                                                                        aCTGCTTCTACTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggacattcttcgcggctgactcagtcatttaatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcttatttagatcgtttcttcgccatt                                                                              >  2:1335322‑M1/1‑78 (MQ=255)
                                                                                                                                                           gCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaa                                                                                                            <  1:549371‑M1/206‑132 (MQ=255)
                                                                                                                                                             ttCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaag                                                                          >  1:167288‑M1/1‑73 (MQ=255)
                                                                                                                                                              tctcCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagacc                                                                                            >  1:1207711‑M1/1‑72 (MQ=255)
                                                                                                                                                                    cACCATCATGTTATTTTCGCCACATCATAATCCTGGGCCTGCTGAAGAATAATTGAAATGATATTAttaattccactgtctttggtagaggacagcgctaagtaaggtgcgaataagcgcggaaattcttctcgcctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttat                                                                   >  1:931858‑M1/1‑66 (MQ=255)
                                                                                                                                                                      ccATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagagga                                                                                                                                                                                                                     >  2:1296425‑M1/1‑64 (MQ=255)
                                                                                                                                                                      ccATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagagga                                                                                                                                                                                                                     <  1:1296425‑M1/90‑27 (MQ=255)
                                                                                                                                                                            tGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagttt                                                          <  2:512724‑M1/239‑182 (MQ=255)
                                                                                                                                                                            tGTTATTTTCGCATCATCATATTCCTGGTCTTGCTGAAGAATAAATGAATTGATATTAttaatttcgctgtgtttgttagaggaaagttctaaggaaggttcgaataagcggagaaattcttctcggctgactcagtcatttcatttcttcttgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagtccgtttcttcgccatataaggcgttatccccagttt                                                          <  2:2103226‑M1/239‑182 (MQ=255)
                                                                                                                                                                                   ttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatcccc                                                               >  1:247864‑M1/1‑51 (MQ=255)
                                                                                                                                                                                   ttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaag                                                                                                                                                                                                           <  2:1474413‑M1/87‑37 (MQ=255)
                                                                                                                                                                                    tCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgag                                                  <  1:858159‑M1/239‑190 (MQ=255)
                                                                                                                                                                                    tCGCCAAATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtaag                                                  <  2:2031209‑M1/239‑190 (MQ=255)
                                                                                                                                                                                     cGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagac                                                                                             <  2:686143‑M1/195‑147 (MQ=255)
                                                                                                                                                                                                   ccTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgac                                   <  1:728762‑M1/239‑205 (MQ=255)
                                                                                                                                                                                                     tGGGCTTGCTGAAGAATAATTGAAATGTTAGTAttaattctactgcctttggtagaggaaagtgctaaggaaggtgcgattaagcgggtaatttcttctcggctgactcagtcatttcatttcttcatgtttgagccgcttttttctcccgtaaataccttgaatcagcctatttagaccgtttcttcgctatttaaggcgttatccccagttattagtgagatctctcaccttgacgt                                 >  2:71382‑M1/1‑33 (MQ=255)
                                                                                                                                                                                                     tGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgt                                 <  2:1446685‑M1/239‑207 (MQ=255)
                                                                                                                                                                                                     tGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataag                                                                                                                                                                                            <  2:1391967‑M1/84‑52 (MQ=255)
                                                                                                                                                                                                     tGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataag                                                                                                                                                                                            >  1:1391967‑M1/1‑33 (MQ=255)
                                                                                                                                                                                                      gggCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgag                                                  >  1:1920489‑M1/1‑32 (MQ=255)
                                                                                                                                                                                                       ggattgctGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagtggaaagtgctaaggaaggtgcgaataagcagggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaactgccttgaatccgcctatttagaccgtttcttcgccatttaagtcgttatccccagtttttatggagatctctc                                           >  2:2085637‑M1/4‑31 (MQ=255)
                                                                                                                                                                                                       ggCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccggtaaatccctggattcagcttatttggacgttttcttccccatttaggcctttatccccattttttatggagatttctcccactaccgaa                                >  1:1245675‑M1/1‑31 (MQ=255)
                                                                                                                                                                                                       ggCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgta                                >  2:1971412‑M1/1‑31 (MQ=255)
                                                                                                                                                                                                       ggCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgta                                >  2:853993‑M1/1‑31 (MQ=255)
                                                                                                                                                                                                       ggCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgta                                >  1:1737287‑M1/1‑31 (MQ=255)
                                                                                                                                                                                                       ggCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgta                                >  1:2078992‑M1/1‑31 (MQ=255)
                                                                                                                                                                                                       ggCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcc                                                                                                                 <  1:615267‑M1/157‑127 (MQ=255)
                                                                                                                                                                                                       ggCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaa                                                                                                                                                                                    >  2:1533604‑M1/1‑31 (MQ=255)
                                                                                                                                                                                                       ggCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaa                                                                                                                                                                                    <  1:1533604‑M1/90‑60 (MQ=255)
                                                                                                                                                                                                       ggCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcc                                                                                                                                                                                                                                 <  1:563634‑M1/45‑15 (MQ=255)
                                                                                                                                                                                                       ggCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcc                                                                                                                                                                                                                                 >  2:563634‑M1/1‑31 (MQ=255)
                                                                                                                                                                                                       ggCTTGATGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggatgactcagtcatttcatttcttcatgtttgagccgattttttctaccgtaaatgccttgaatcagcctatttagaccgtttcttcgccattcaaggcgttatcccaagtttttagtgagatctctcccactgacata                                >  2:1318379‑M1/1‑31 (MQ=255)
                                                                                                                                                                                                            gCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaatgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgac                                   <  2:1696814‑M1/230‑205 (MQ=255)
                                                                                                                                                                                                            gCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcattt                          >  1:360693‑M1/1‑26 (MQ=255)
                                                                                                                                                                                                            gCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgag                                                  <  1:1339169‑M1/215‑190 (MQ=255)
                                                                                                                                                                                                            gCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagttt                                                          <  1:566323‑M1/207‑182 (MQ=255)
                                                                                                                                                                                                               gaagaaTAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggt                       <  2:172666‑M1/239‑217 (MQ=255)
                                                                                                                                                                                                               gaagaaTAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggt                       <  1:71382‑M1/239‑217 (MQ=255)
                                                                                                                                                                                                                    agaattgAAATGATATTAttaattccactgcctttggtaaaagaaagtgctaaggaaagtgcgtatatgcggggaaattcttctcggctgactcagtcatttcatttcgtcatgtttgggctgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtgtttagtgtgatctctcccactgacgtatcatttggcccg                    <  2:1737287‑M1/235‑220 (MQ=255)
                                                                                                                                                                                                                        ttGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaa              >  1:372024‑M1/1‑14 (MQ=255)
                                                                                                                                                                                                                             aTGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccggttttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttgggccgcccgaaacagg         >  1:1563387‑M1/1‑9 (MQ=255)
                                                                                                                                                                                                                             aTGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacagg         >  1:1214770‑M1/1‑9 (MQ=255)
                                                                                                                                                                                                                             aTGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacagg         >  1:2076116‑M1/1‑9 (MQ=255)
                                                                                                                                                                                                                             aTGATATTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc                                                                                                                           <  1:1836474‑M1/125‑117 (MQ=255)
                                                                                                                                                                                                                                atatTAttaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttg      >  1:458399‑M1/1‑6 (MQ=255)
                                                                                                                                                                                                                                  attattaattccgctgcctttggtagaggaaagtgctaagtaaaggtctaataagcgtgggaattcttttcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacacgttggc    <  2:2078992‑M1/239‑236 (MQ=255)
                                                                                                                                                                                                                                   ttatttattcctctgccttgggtagaggaaagtgctaagaaaggtgctaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccggaaatgccttgaatcagcctagtaagagcctttcttcg                                                                                   <  2:262535‑M1/159‑157 (MQ=255)
                                                                                                                                                                                                                                    tattaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctccgactaacgtatcatttggtccgcccgaaacaggttggcca  <  2:378976‑M1/239‑238 (MQ=255)
                                                                                                                                                                                                                                    tattaattccactgcctttggtagaggaaagtgctaaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggcca  >  1:669494‑M1/1‑2 (MQ=255)
                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                             
CTGCTTAATTAATTCCTTTCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGC  >  NC_007779/1300811‑1301277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.