| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 2,016,354 | C→A | 16.1% | A330E (GCA→GAA) | fliF → | flagellar basal body M‑ring protein FliF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 2,016,354 | 0 | C | A | 16.1% | 193.0 / 4.9 | 69 | A330E (GCA→GAA) | fliF | flagellar basal body M‑ring protein FliF |
| Reads supporting (aligned to +/- strand): ref base C (44/12); new base A (2/10); total (46/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.65e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGCAAATTGAAGATCTG > NC_007779/2016117‑2016586 | cGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGc < 1:1394911/238‑1 (MQ=255) cTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCATCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCaaa < 2:1848092/238‑1 (MQ=255) cTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAAt < 1:1096203/239‑1 (MQ=255) ttgGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCACTCAAGAACAAACGGAAGCACAGTATCGCCCTAACGGTGCTGAATCGCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGCGCGAGCACCGTGGTTCCGGTTATCCGGGCGGC‑GCACCGGCGGCGTTGTCGAATCAACCGG‑CACCTGCGACTCCAGCGTCACGCAGC‑ACGCACCCGGCACTTCaaacc > 2:160706/1‑237 (MQ=255) ggTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATa > 1:1702085/1‑238 (MQ=255) aCGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCg > 1:967278/1‑239 (MQ=255) gcgcAGGTTATGGCGCAGCTGGACATCGCGAGTAAAGAACAAACGGAAGAACAGTAACGCCCTAACGGTGACGAATCACATGCGGCGCTACGTTCACGCCAGCTTAATGAGAGCGAGCACAGCGGTTCCGGTTTTCCGAGCTGC‑GTACCGGGGGCGTTGTCGAGTCAACAGG‑CACCTGCGACTAACGCGCCAACCAGC‑ACGCCGCCGGAGTATCAAAATAAACGCacgcaacagtagc > 2:33886/4‑234 (MQ=255) gCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCaa < 1:1653058/211‑1 (MQ=255) gCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCaa > 2:1653058/1‑211 (MQ=255) gCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGa > 1:716375/1‑238 (MQ=255) gCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGa > 1:1690009/1‑238 (MQ=255) gCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGa > 1:1529269/1‑238 (MQ=255) caggtttACGGCGCCGCTGAACTGCACCAGTAAATAACAAACGGAAGAACGGTACCGCCCTAGCGGTGATGAATCTCATGCGGCGCTTGTGTACCGCCAGCTTAAGGGGGGCGAGCAAAGCGTTTCCGGTTATCCGGGCGGC‑GTACCGGGGGGTTTGCCAAACCACCCGC‑CCCTTGAGAATACCGCGCAATCCACC‑CCCCCCCCGGCAAATAAAAAAAACCGCCAGCAGCAGGCGAGca < 2:700575/234‑1 (MQ=255) ggTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGcacc > 1:1173820/1‑238 (MQ=255) cGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGc > 1:1991903/1‑239 (MQ=255) cAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAg > 1:8601/1‑239 (MQ=255) tGGATTTCGCAAGTAAAGAACAAACGGAAAAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGTTTAATGAGAGCGAGCAAGGCGGTTCCGTTTACCCGGGCGGC‑GTCCCGGGGGCGTTGTCGAATCACCCGG‑CCCCTGCGAATAACGCGCAAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTggg < 1:1517463/239‑1 (MQ=255) tGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTACCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTCCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CCCCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGAAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTggg < 1:1942548/239‑1 (MQ=255) ggACTTCGCAAGTAAAGAACAAACGGAAGAACAGTACCGCCCTAACGGTGATGAATCTCAGGCGGCGCTTCGTTCACGCCGGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTACCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGAAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTggg < 1:2012127/238‑1 (MQ=255) ccAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGc > 1:1926898/1‑181 (MQ=255) aaaGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGcaca < 1:163268/237‑1 (MQ=255) aCGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGa > 1:195623/1‑239 (MQ=255) aCGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAAGGAGAGCGAGCAAAGCGGTTCCGGTTACCCGGGCGGC‑TTACCGGGGGGGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGAAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGa < 1:1812246/239‑1 (MQ=255) cGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCAGGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTCCCGGGGGCGTTGTCGAATCAACCGG‑CCCCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGAAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGaa < 1:1341174/239‑1 (MQ=255) agaaCAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCa > 2:1838466/1‑239 (MQ=255) tATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGCAGCACACAGCGGAATGAAACCAGTAACt > 1:494384/1‑238 (MQ=255) aCGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCCCCCAGCGGAATGAAACCAGTAAATACGAAGTCGa > 2:710516/1‑238 (MQ=255) aCGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGa > 2:1175895/1‑238 (MQ=255) atgaATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGcacca > 1:1735099/1‑174 (MQ=255) atgaATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATa > 1:1318632/1‑183 (MQ=255) atgaATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCAcc > 1:1206501/1‑239 (MQ=255) atgaATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCAcc > 1:1090476/1‑239 (MQ=255) atgaATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCAcc > 1:344483/1‑239 (MQ=255) atgaATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCAcc > 1:659549/1‑239 (MQ=255) ctcATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCg > 1:295309/1‑238 (MQ=255) cATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATa > 1:869978/1‑175 (MQ=255) tGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCAt > 1:1754535/1‑238 (MQ=255) gcgcTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAg > 1:34019/1‑189 (MQ=255) gctctgTTCACGCCGGCTAGAGGGGGGGGAGCAAGGCGGTCCCGGTTATCCGGGCGGC‑GTCCCGGGGGGGTGGTCGAA‑CAACCGGCCCCCTGAAAATACCGCGCCAACCACC‑CCCCCGCCGGAAAATAAAAAAAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCaaaa < 2:295309/234‑1 (MQ=255) cGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCCGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCGTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATACTGGGCCGCGTAGCACAAATCGGAATGCAACCACAAACTACAACGTCGATCGCACCATCCGACACACGAAAATGa > 2:1982385/1‑238 (MQ=255) gttgaaTGGGAGCGAGCAAGGGGGTCCCGGTTAGCCGGGCGGC‑GTACCGGGGGCGTTGTCGAACCACCCGC‑CCCCTCCGAAAAACGCGCAAATAACC‑CCCCCCCCGGAAAATAAAAATAACCGCCAGCAGCAGGCGAg < 2:1861183/134‑1 (MQ=255) cTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTGCCGGGGGCGTTGTAGAATCAACGGG‑CAACGGCGAGTAACGCGCCAATCAGC‑ACGCCGCCGGCAAATAAAAATAACCGCAAGCAGCAGGCGAGCACCACCAGCAGTAGGGGGCCGTGTAGCAAACAGCGGAATGAAAACAGTACCTACGCAGCAGAGCGCAGCATCCGTCACACCACAACGAACGTGCGCGAtgt > 2:1439066/1‑239 (MQ=255) cTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGAtgt > 1:92804/1‑239 (MQ=255) gaggagagcAAATCGTTTCCGGTCA‑ACGGGTGACGGTACAGGGGGCGTATACGAACCACCCGC‑ACCCTGC‑AATACCGGACCAATCCGCGCCACCTCCAGAAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACg < 2:8601/233‑1 (MQ=255) agcgagcAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGcacc > 2:1434304/1‑132 (MQ=255) agcgagcAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGcacc < 1:1434304/132‑1 (MQ=255) agcgagcAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGc > 1:1861183/1‑138 (MQ=255) agcgagcAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGt > 1:10620/1‑144 (MQ=255) agcgagcAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACg > 1:1641796/1‑236 (MQ=255) agcAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTgg > 1:1887252/1‑219 (MQ=255) tCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATAc > 1:676087/1‑194 (MQ=255) ttAGCCGGGCGGC‑GCCCCGGGGGCGTGGGCAAAACAACCGG‑CCCCTGCGAATACCGCGCCAATCAGC‑ACGCCTCCGGAAAAGCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCgtggtg < 1:105509/238‑1 (MQ=255) taaTCGGGGCGGC‑GTACCGGGGGCGTTGCCAAAACACCCGG‑CACCTGCAAATAACCCGCCAATCACC‑CCCCCCCCGGCAAATCAAAAAAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCgtggtg < 1:1547214/236‑1 (MQ=255) ccGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAAtt > 1:1077722/1‑238 (MQ=255) gcggc‑gTCCGGGGGGCGTTGTCGAAACACCCGG‑CCCCTGCGAATAACGCGCAAACCACC‑ACGCCTCCGGCAAACCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACaa < 1:710516/238‑1 (MQ=255) c‑gTCCCGGGGGCGTTGGCGAATCACCCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACCCCCCGGGAAAACAAAAAAAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAg < 2:1281549/130‑1 (MQ=255) gCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGaaa > 1:1281549/1‑130 (MQ=255) gTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCaa > 2:1108314/1‑187 (MQ=255) gTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGAAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCaa < 1:1108314/187‑1 (MQ=255) tCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGAAAATCAAACTAACCGACAGCAGCAGGCGAGCACCACCACCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTCCGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTAGCGGTCGTAGTGACTTACAGAACCGTCACAGATGGCAAACCGtcg > 2:1248204/1‑236 (MQ=255) aCCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGcc > 1:211686/1‑237 (MQ=255) gCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTCGCCTCgcagcacgga > 2:777653/1‑235 (MQ=255) cgcgCCAATCAGC‑ACGCCTCCGGCAAATCAGAATAACCGCCAGCAGCAGGAGAGCACCACCAGCAACAGTGGGCCGCGTAGCACACAGCGGAATGAAACGAGTAACTACGAAGTCTACCGCACCATTCGTCATACCAAAATCAACGTGGGCTATGTGCACAGTCTGTCAGTCGCGATCGCGGAGAATTACGAAACCGTGTCAGATAGCAAACCGTGGCCTCCCACCAACGACCAGATgg > 2:1500904/1‑238 (MQ=255) cgcgCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGa > 1:1488570/1‑239 (MQ=255) gcgcCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGaa < 1:1838466/239‑1 (MQ=255) aaccAGC‑ACGCCTCCGGCAAACAAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGCaaa < 1:1796976/236‑1 (MQ=255) ggctcccccTCCGATAAATAAAAAGAGCCGTCAGCAGCAGGCGATCACCCCCAGCAATAGTGGGCCGTGTAGCACACAGCGTTATGTAACCAGTAACTACGAAGTCGATCGCTCCATTCGTCATTCCAAAATGAACGTGGGCTATGTGCAACGTCTGTCATTCGCGGTCGTGTTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAACAACGAACAGATGAAGCAAATTg < 2:2019865/232‑1 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCa > 1:1567541/1‑185 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGCAAATTGAAGATCTg > 2:964668/1‑239 (MQ=255) cGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCa > 2:2008399/1‑182 (MQ=255) cGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCa < 1:2008399/182‑1 (MQ=255) | CGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGC‑GTACCGGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGC‑ACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGCAAATTGAAGATCTG > NC_007779/2016117‑2016586 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |