| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 3,857,502 | T→G | 20.4% | V250G (GTG→GGG) | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 3,857,502 | 0 | T | G | 20.4% | 98.7 / 6.3 | 70 | V250G (GTG→GGG) | gpsA | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (25/28); new base G (13/2); total (38/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.85e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGCACTGCGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTTACTAGG > NC_007779/3857265‑3857739 | tgcACTGCGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTg < 1:210886/239‑1 (MQ=255) aCTGCGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCtt < 1:1999837/239‑1 (MQ=255) cGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGTGATCTGGGGCTTa > 1:1536631/1‑236 (MQ=255) ggCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCt < 1:511552/238‑1 (MQ=255) tCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAATCGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑c < 1:1671624/239‑1 (MQ=255) aTCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑CCAGGCGCGTAAccg > 1:1241837/1‑238 (MQ=255) tCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGGTCTGGTGCTTACCTGTACCCACAA‑CCAGTCGCGGAAccg‑cc > 1:1562804/1‑239 (MQ=255) tGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGGGAGCTGGTGCTTTCCTGTACCGGCAA‑ACAGTCGCGTAACCG‑CCGTTTTGGCatga > 1:1418237/1‑239 (MQ=255) tGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGGGGTTTCCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCatga > 1:2046099/1‑239 (MQ=255) cAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGCCAA‑CCAGCCGCGTAACCG‑CCGTTTTGGCATGATGCTCgg > 1:1396017/1‑239 (MQ=255) cAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGCGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCCACAA‑ACAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCgg > 1:1522716/1‑239 (MQ=255) tGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGGGCTTTCCTGTCCCGACAA‑CCAGTCGCGTAACCG‑CCGGTTTGGCATGATCGTCGGG‑CAgg > 1:412944/1‑239 (MQ=255) ggcggcGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGGGCTTACCTGTTCCCGCAA‑CCAGTCGCGTAACCG‑CCGCTTTGGCCTGATGCTCCGT‑CAggg > 1:183952/1‑239 (MQ=255) tGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCt < 1:622765/172‑1 (MQ=255) aTTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACCA‑CCAGTCGCGTAACCG‑CCGGTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGagaa > 1:983459/1‑239 (MQ=255) aTTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGGGCTTTCCTGTACCGACCA‑CCAGTCGCGGAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAACGCGCAGGagaa > 1:1931414/1‑239 (MQ=255) tCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTg > 1:265237/1‑138 (MQ=255) tCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTg < 2:265237/138‑1 (MQ=255) ggTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCCTGGCGCTCTGGTGCTTACCTGTACCGACAA‑CCAGGCGCGGAACCG‑CCGGTTTGGCCTGATGCTCGGC‑CAGGGCCTGGATGTACAAAGCGCGCAGGAGAAAGAGGGTCAGGGGGGGGAAAGCCACCGCCATa > 2:1896323/1‑238 (MQ=255) cgcTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCAAGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGt > 1:2015587/1‑155 (MQ=255) ggctggctGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑c > 1:1536881/1‑104 (MQ=255) ggctggctGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑c < 2:1536881/104‑1 (MQ=255) ggctggctGAAATGTCGCGTCTTGGTGCAGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGGGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGc > 1:1279846/1‑239 (MQ=255) ctggctgAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCGTGGCGATCTTGGGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTTGCATGATGCTCGGG‑CAGGGGATGGATGTACAAAGCGCGCAGGGGAAGATTGGGCAGGGGGTGGa > 1:869126/1‑188 (MQ=255) gctgAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGGGGTCTGGGGCTTACCTGTACCGACAA‑CCAGTCGCGGAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGGTGTACAAAACGCGCAGGagaaga > 1:972657/1‑169 (MQ=255) gctgAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCCTGGGGGTCTCGGGCTTTCCTGTACCCACAA‑CCACGCGCGGAACCGCCCCTTTTGGCTTG‑TGCCCGGT‑CAGGGCCTGGGGGTACCAAGCGCGCAGGGGAAGATTTGGCAGGGGGGGGGAGGCTTCCGCAACACGAAAGAAAGCCGCGAAACGGGGCCTCGCCTCGGGGGTGa > 2:340262/1‑239 (MQ=255) tgAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGCCCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATTTGGTTCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGaa < 1:1212887/238‑1 (MQ=255) cgcgTCTTGGTGCGGCGCTGAGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCCTGGCGGTCTGGGGGTTACCCGTAACCACAA‑CCAGTCCCGTTACCG‑CCGTTTTGGCGTGATGGCCGGTACAGGG‑GGGGGTGACCATAGCGCCCAGGGGGAGAGTGGTGAGGTGGGGGAAGGCTACCGCCATACGGAAGGAGGCAGCGGTCTGGGGCATCGCTTCGGGGCTTAAATGCCCAtc > 2:2093987/1‑238 (MQ=255) cgTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGGGATCTGGGGCCTACCGGTTCCGACCA‑ACAATCGAGTCACCG‑CCGCTTTTGTATGATGGCCGGG‑CAGGGCCTGGATGAACAAAGCGCGGAGGAGGAGTCTGGTCAGGGGGTGGGAGGAGCACGCCAAAAGCAAGAAGTACGGGAACAGGCGGAGGGCCTCGGGGTTGCACTGCCAaaaa > 2:2113490/1‑238 (MQ=255) tCTTGGTGCGGCGCTGGGTGCCGCCCCTGCCCCTTTTAGGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAC‑CCAGCCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCa < 1:1919679/128‑1 (MQ=255) gTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATTCCCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGGCAGGGGGTGGAAgg > 1:1980700/1‑169 (MQ=255) gcggcgCGGGGTGCCGACCCTGCCACCTTGAGGGGCATGGCGGGTCTTGGCGATCTGGTGCTTTCTTGTCCCGAAAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAAt < 1:2113490/239‑1 (MQ=255) gcgcTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGGCTGGGGGGGTGGGGCTTCCCTGTTCCCACAA‑ACAGTCGCGGAAACG‑CCGTTTTGGGATGATGCTCGGT‑CCGGGCATGGATGGACCAAGCGCGCCGGAGAAGAATGGGCAGGTGGGGGGAGGCGACCGCAAAACGGAAAAAACTCGCGAACTGGGGCATCGGCTCGGGGTTGTAATCCCCACAACCCAACAAATTTa > 2:1399693/1‑239 (MQ=255) cgcTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑CCAGTCGCGTAAACG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGGGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGGTGAAATGCCAATAACCGAGGAAATTTa > 1:921646/1‑238 (MQ=255) cgcTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGGGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTa > 1:444399/1‑238 (MQ=255) gcggggTGCCGACCCTGCCACCTTTATGGGCGGGGGGGGGTTTGGCGTTTTGGTGCTTCCCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 1:1557282/236‑1 (MQ=255) gcTGGGTGCCGCCCCGGCCACCTTTAGGGGCAGGGGGGGGTTGGGCGATCTGGTGCTTCCCTGTCCCGAAAA‑CCAGTCGGGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 1:240318/239‑1 (MQ=255) gcTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGGGAAGATTGGTCAg > 1:174297/1‑151 (MQ=255) gcTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑ACAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGGCAGGTGGGGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGGTGAAATGCCAATAAACGAGGAAATTTATc > 1:1409251/1‑239 (MQ=255) gcTGGGTGCCGACCCTGCCACCTTTAGGGGCATGGCGGGGTTTGGCGTTTTGGTGCTTCCCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 1:340262/239‑1 (MQ=255) gcTGGGTCCCGCCCCCCCCACGTTTAGGGGCTGGGGGGGGTTTGGCGTTTTGG‑GGTTTCCTGTTCCCGCAACCCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 1:2093987/239‑1 (MQ=255) cgggtggcccccccTGCCACCTTTATGGGCATGGCGGGGCTTGGTGTTCTGGTCCTTCCCTGTCCCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 1:1399693/227‑1 (MQ=255) cggggTGCCGACCCTGCCCCTTTTATGGGCGTGGGGGGTCTTGGCGATTGGTTGCTTACCTGTCCCGACAA‑CCAGGCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 1:1080481/236‑1 (MQ=255) ggggcccGCCCCTCCCCCTTTTAGGGGCAGGGGGGGGTGGGGGGATTTGGTGCTTACGTGTACCGACAA‑CCGGCGGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCaa < 1:1069698/233‑1 (MQ=255) ggTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGGGATCTGGGGCTTACCTGTACCCACAA‑CCAGTCGCGGAACCC‑CCGGTTTGGCCTGATGCCCGGT‑CAGGGGATGGGTGTACAAAACGCGGCGGGGAAGAATGGTCCGGGGGGGGGAGGGTACCGCAATAAGAAAGAAGGCCGCGAAATGGGGGAGCGCCTCGGCGGTGAGATGCCAATAAACGAGGAAATTTAttcagg > 2:1069698/1‑234 (MQ=255) cccTGCCCCCTTTAGGGGCAGGGGGGGGCTTGGCGATTTGGTGCTTCCCTGTCCCGACAC‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTatat < 1:1822822/238‑1 (MQ=255) cgtcccACCTTTAGGTGGAGGGCGGGGCTTGGCGTTTGGGTTCTTACTTGGACCACCAG‑CCAGTGGCTTTACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTg < 1:1784655/235‑1 (MQ=255) cTGCCACCTTTATGGGCATGGCGGGGCCTGGCGATCTGGTGCCTACCCGTACCGCCAA‑ACAGTCGCGTAACCG‑CCGGTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGGGAAGATTGGGCAGGGGGGGGGAGGCGACCGCAAAACGAAAGAAGGTCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAAACGAGGAAATTTATCCAGtattaaaattt > 2:241497/1‑233 (MQ=255) ccACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTg < 1:809039/46‑1 (MQ=255) ttttAGGGGCGGGGGGGGGTTGGGGGTTCGGGTTCTTACCGGCCCCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGtggtgg < 1:1499921/136‑1 (MQ=255) tGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCa > 2:741100/1‑90 (MQ=255) tGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCa < 1:741100/90‑1 (MQ=255) ggaggggggggTTTGGCGTTTTGGAGTTTACCGGTACCGAAAA‑CCAGTGGGGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAAcgcgcg < 1:1548727/231‑1 (MQ=255) gCATGGGGGGCCTTGGCGCTGTGGTGCTCCCATGGCACGAAAT‑GCAGCCGCGAAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAAcgcgcg < 1:362795/238‑1 (MQ=255) cgggggCGGGGTTTGGCGATCTGGTGCTTACTTGTCCCGACAA‑CCAGTGGTGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAAcgcgcg < 1:173542/234‑1 (MQ=255) cATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑CCCGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGGGGAAGGCTACCGCAATACGAAAGAAGGCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAAcgcgcgcg > 1:1639547/1‑239 (MQ=255) aTGGCGGGGCTTTGCGATCTGGTGCTTTCCTGTACCCACAA‑CCAGGCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAACGCGCCGGGGAAGATTGGTCAGGGGGGGGAAGGCTACCGCAATAAGAAAGAAATCCGCGAACTGGCGCATCGCTTCGGCGGTGGAATGGCAATAACCGAGGGAATTTATCAAGGATTATATTTCGGGAAAAAagcgcgcgc > 2:1641216/1‑238 (MQ=255) aTGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGa > 1:1337492/1‑239 (MQ=255) aTGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGG‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAAc > 1:1540001/1‑160 (MQ=255) gggggggTTTGGCGTTTTGTTGCTTCCCTGCACCGAAAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAg < 1:1760908/235‑1 (MQ=255) ggCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGGATtata > 1:1054012/1‑216 (MQ=255) ggCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGGTTTGGCATGATGCTCGGT‑CAGGGCATGGAAGTACaaa > 1:1998338/1‑95 (MQ=255) gCGGGGTTGGGCGATCTGGTGCTTACCTGTACCGACAC‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCAGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAgg < 1:1684118/238‑1 (MQ=255) tGGCTATCTGGTTCTGCCCTGTCCCGCAAA‑CCAGTGGGGTACCCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGa < 1:1332486/239‑1 (MQ=255) tGGCGTTCTGGTGCTTCCCTGTACCGACAA‑CCGGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGa < 1:241497/239‑1 (MQ=255) tGGCGATCTGGTGCTTCCCTGTCCCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGa < 1:1516638/239‑1 (MQ=255) cGATCTGGGTCTTCCCTCTCCCACCAC‑CCAGTCGTGTACCCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACt < 1:262996/238‑1 (MQ=255) tCTGGTGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGAc > 1:1993280/1‑234 (MQ=255) ttGGGGCTTACCTGTCCCAACAA‑CCATGCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGTAGCATTGACTTTACt < 1:1710587/238‑1 (MQ=255) gTGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGATGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTTACTAgg > 1:2007205/1‑239 (MQ=255) | TGCACTGCGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTTGGCGATCTGGTGCTTACCTGTACCGACAA‑CCAGTCGCGTAACCG‑CCGTTTTGGCATGATGCTCGGT‑CAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTTACTAGG > NC_007779/3857265‑3857739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |