mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 258 (2.600) | 12 (0.120) | 12/544 | NT | 4.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 236 (2.460) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4179656 | 96 (0.970) | 3 (0.030) | 3/550 | NT | 2.9% | intergenic (+73/‑340) | rplA/rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 |
| ? | NC_000913 | = 4179766 | 106 (1.090) | intergenic (+183/‑230) | rplA/rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 | |||||
| * | ? | NC_000913 | = 3927413 | 155 (1.560) | 7 (0.070) | 6/552 | NT | 4.5% | coding (259/993 nt) | asnA | asparagine synthetase A |
| ? | NC_000913 | = 3927459 | 145 (1.490) | coding (305/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | NC_000913 | 3736656 = | 187 (1.880) | 3 (0.030) | 3/542 | NT | 1.6% | coding (522/825 nt) | bax | putative glucosaminidase |
| ? | NC_000913 | = 3736652 | 182 (1.900) | coding (526/825 nt) | bax | putative glucosaminidase | |||||
| * | ? | NC_000913 | 3718477 = | 168 (1.690) | 4 (0.040) | 4/556 | NT | 2.3% | coding (568/711 nt) | yiaF | barrier effect co‑colonization resistance factor; DUF3053 family lipoprotein |
| ? | NC_000913 | 3718496 = | 173 (1.760) | coding (549/711 nt) | yiaF | barrier effect co‑colonization resistance factor; DUF3053 family lipoprotein | |||||
| * | ? | NC_000913 | 3343679 = | 224 (2.260) | 3 (0.030) | 3/550 | NT | 1.4% | coding (300/558 nt) | lptA | lipopolysaccharide export ABC transporter periplasmic binding protein; Lipid A binding protein; LPS export and assembly protein |
| ? | NC_000913 | 3343696 = | 213 (2.190) | coding (317/558 nt) | lptA | lipopolysaccharide export ABC transporter periplasmic binding protein; Lipid A binding protein; LPS export and assembly protein | |||||
| * | ? | NC_000913 | 2514274 = | NA (NA) | 3 (0.030) | 3/556 | NT | 3.2% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 4543608 = | 92 (0.940) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||