Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3798993	3799507	515	30 [28]	[23] 33	[waaU]–[waaZ]	[waaU],[waaZ]

TGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCGAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGC  >  NC_000913/3798738‑3799185                                                                                                                                                                                                                                                               |                                                                                                                                                                                                  tGCAAGTCGTAGTTGATGGAAACATTACCCTCACCATAAATATGCTTCATAATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAAGCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCtt                                                                                                                                                                 <  1:860470/289‑1 (MQ=255)      gTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTCCTCATATGTTCTTTTAAACATTCCTCGTGGGGAGGGTAAAATGCATAGTAACGATTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTTATAATATTAAGCTATGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCCAGAAAACCGTTTGACTCTTTAATa                                                                                                                                                            >  2:860470/1‑289 (MQ=255)                                 aCCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTtta                                                                                                                                       <  1:491739/283‑1 (MQ=255)                                           tGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACCAAACTAAAATATAGTTTTATTATTagagagctg                                                                                                                         >  2:491739/1‑284 (MQ=255)                                                 aGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGaaa                                                                                                                                                                               <  2:579682/227‑1 (MQ=255)                                                 aGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGaaa                                                                                                                                                                               >  1:579682/1‑227 (MQ=255)                                                                                           tCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGa                                                                                                                                                                      >  1:173006/1‑194 (MQ=255)                                                                                           tCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGa                                                                                                                                                                      <  2:173006/194‑1 (MQ=255)                                                                                                                              ataCCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGTTTGa                                                                                                                                                                      >  2:765913/1‑159 (MQ=255)                                                                                                                              ataCCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGa                                                                                                                                                                      <  1:765913/159‑1 (MQ=255)                                                                                                                                                               ttttAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTaa                                                                                   <  2:560620/209‑1 (MQ=255)                                                                                                                                                               ttttAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTaa                                                                                   >  1:560620/1‑209 (MQ=255)                                                                                                                                                                                        tGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGa                                                                                                                                                                      >  1:186605/1‑101 (MQ=255)                                                                                                                                                                                        tGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGa                                                                                                                                                                      >  1:329758/1‑101 (MQ=255)                                                                                                                                                                                        tGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGa                                                                                                                                                                      <  2:329758/101‑1 (MQ=255)                                                                                                                                                                                        tGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGa                                                                                                                                                                      <  2:186605/101‑1 (MQ=255)                                                                                                                                                                                         gCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTttattatta                                                                                                                                 <  2:133695/137‑1 (MQ=255)                                                                                                                                                                                         gCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTttattatta                                                                                                                                 >  1:133695/1‑137 (MQ=255)                                                                                                                                                                                          cTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACAt                                                                                                                                                                                                   <  2:489405/70‑1 (MQ=255)                                                                                                                                                                                          cTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACAt                                                                                                                                                                                                   >  1:489405/1‑70 (MQ=255)                                                                                                                                                                                               aTGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCGAACTTaa                                              >  2:168474/1‑214 (MQ=255)                                                                                                                                                                                               aTGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCGAACTTaa                                              <  1:168474/214‑1 (MQ=255)                                                                                                                                                                                                  aGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCGAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGc  <  1:782268/255‑1 (MQ=255)                                                                                                                                                                                                  aGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCGAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGc  >  2:782268/1‑255 (MQ=255)                                                                                                                                                                                                    ggCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGt                                                                                                                                                                         >  1:855275/1‑86 (MQ=255)                                                                                                                                                                                                    ggCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGt                                                                                                                                                                         <  2:855275/86‑1 (MQ=255)                                                                                                                                                                                                                                tatCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGa                                                                                                                                                                      <  2:257300/61‑1 (MQ=255)                                                                                                                                                                                                                                tatCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGa                                                                                                                                                                      <  2:480751/61‑1 (MQ=255)                                                                                                                                                                                                                                tatCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGa                                                                                                                                                                      >  1:480751/1‑61 (MQ=255)                                                                                                                                                                                                                                tatCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGa                                                                                                                                                                      >  1:257300/1‑61 (MQ=255)                                                                                                                                                                                                                                                               |                                                                                                                                                                                                  TGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCATAGTTTCAAAGGGGTCTAATACAATATCGAACTGTAAATCCCGCAGATGCTTACATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCGAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGC  >  NC_000913/3798738‑3799185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑