mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,937,280 | 0 | T | . | 56.9% | ‑3.2 / inf | 168 | intergenic (+112/‑14) | rbsB/rbsK | D‑ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor/ribokinase |
| * | NC_000913 | 526,796 | 0 | C | G | 21.7% | 227.2 / 56.8 | 83 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 526,792 | 0 | A | C | 20.4% | 210.9 / 55.4 | 89 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 16 (0.180) | 15/510 | 4.4 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 15 (0.170) | 15/518 | 4.5 | 96.8% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 1 (0.010) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 3207636 | 237 (2.620) | 5 (0.060) | 4/520 | 8.6 | 2.1% | coding (266/606 nt) | ttdB | L‑tartrate dehydratase, beta subunit |
| ? | NC_000913 | 3207646 = | 234 (2.610) | coding (276/606 nt) | ttdB | L‑tartrate dehydratase, beta subunit | |||||
| * | ? | NC_000913 | 3928062 = | 200 (2.210) | 3 (0.030) | 3/508 | 9.1 | 1.5% | coding (908/993 nt) | asnA | asparagine synthetase A |
| ? | NC_000913 | = 3928058 | 195 (2.230) | coding (904/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | NC_000913 | = 3751631 | 191 (2.170) | 12 (0.140) +GGTCA |
3/502 | 9.1 | 5.9% | coding (238/741 nt) | yiaT | putative outer membrane protein |
| ? | NC_000913 | 3751632 = | 191 (2.110) | coding (237/741 nt) | yiaT | putative outer membrane protein | |||||
| * | ? | NC_000913 | = 2869114 | 83 (0.920) | 3 (0.030) | 3/502 | 9.1 | 3.5% | coding (406/627 nt) | pcm | L‑isoaspartate protein carboxylmethyltransferase type II |
| ? | NC_000913 | 2869190 = | 84 (0.970) | coding (330/627 nt) | pcm | L‑isoaspartate protein carboxylmethyltransferase type II | |||||
| * | ? | NC_000913 | = 793517 | 93 (1.030) | 3 (0.030) | 3/504 | 9.1 | 3.2% | coding (272/1473 nt) | modF | molybdate ABC transporter ATPase |
| ? | NC_000913 | 793663 = | 92 (1.060) | coding (126/1473 nt) | modF | molybdate ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 4072623 | 66 (0.730) | 3 (0.030) | 3/510 | 9.2 | 4.2% | coding (29/879 nt) | yihT | 6‑deoxy‑6‑sulphofructose‑1‑phosphate aldolase |
| ? | NC_000913 | 4072767 = | 73 (0.830) | coding (805/897 nt) | yihU | 3‑sulpholactaldehyde (SLA) reductase, NADH‑dependent; gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent | |||||
| * | ? | NC_000913 | 1885798 = | 74 (0.820) | 3 (0.030) | 3/512 | 9.2 | 3.9% | intergenic (+9/‑47) | yeaW/yeaX | putative YeaWX dioxygenase alpha subunit; 2Fe‑2S cluster/putative YeaWX dioxygenase beta subunit, reductase component |
| ? | NC_000913 | 1885818 = | 77 (0.870) | intergenic (+29/‑27) | yeaW/yeaX | putative YeaWX dioxygenase alpha subunit; 2Fe‑2S cluster/putative YeaWX dioxygenase beta subunit, reductase component | |||||
| * | ? | NC_000913 | = 4490473 | 78 (0.860) | 3 (0.030) | 3/522 | 9.3 | 3.7% | coding (667/999 nt) | idnR | transcriptional repressor, 5‑gluconate‑binding |
| ? | NC_000913 | 4490477 = | 77 (0.860) | coding (663/999 nt) | idnR | transcriptional repressor, 5‑gluconate‑binding | |||||