mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 24.0% | 42.9 / 11.2 | 25 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,060 | 0 | C | T | 21.9% | 142.2 / 41.7 | 73 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 143 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3741901 = | 253 (2.590) | 14 (0.150) | 7/454 | 7.5 | 5.6% | coding (632/849 nt) | yiaJ | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon |
| ? | NC_000913 | 3742227 = | 232 (2.510) | coding (306/849 nt) | yiaJ | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon | |||||
| * | ? | NC_000913 | = 3780567 | 231 (2.370) | 7 (0.070) | 7/466 | 7.6 | 3.0% | coding (741/1191 nt) | lldD | L‑lactate dehydrogenase, FMN‑linked |
| ? | NC_000913 | = 3780841 | 227 (2.400) | coding (1015/1191 nt) | lldD | L‑lactate dehydrogenase, FMN‑linked | |||||
| * | ? | NC_000913 | = 3220246 | 195 (2.000) | 8 (0.090) | 7/460 | 7.6 | 3.9% | coding (753/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| ? | NC_000913 | = 3220398 | 205 (2.190) | coding (905/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913 | = 3845155 | 235 (2.410) | 7 (0.080) | 6/452 | 7.9 | 3.0% | coding (1192/1767 nt) | adeD | cryptic adenine deaminase |
| ? | NC_000913 | = 3845545 | 228 (2.480) | coding (1582/1767 nt) | adeD | cryptic adenine deaminase | |||||
| * | ? | NC_000913 | 315401 = | NA (NA) | 9 (0.100) | 6/454 | 7.9 | NA | noncoding (173/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315627 = | NA (NA) | noncoding (399/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 4542690 | 44 (0.450) | 6 (0.060) | 6/462 | 8.0 | 11.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 54 (0.580) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4498394 | 3 (0.030) | 15 (0.160) | 6/458 | 8.0 | 84.0% | noncoding (214/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 4498760 | NA (NA) | noncoding (580/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 3186309 | 4 (0.040) | 15 (0.160) | 6/458 | 8.0 | 79.7% | noncoding (214/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 3186675 | NA (NA) | noncoding (580/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 2997112 = | NA (NA) | 15 (0.160) | 6/458 | 8.0 | 72.4% | noncoding (580/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 2997478 = | 6 (0.060) | noncoding (214/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 2069692 = | NA (NA) | 15 (0.160) | 6/458 | 8.0 | 69.2% | noncoding (580/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 2070058 = | 7 (0.070) | noncoding (214/1331 nt) | IS2 | repeat region | |||||