Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1196217	1212837	16621	28 [27]	[27] 36	[icd]–[ycgX]	[icd],ymfD,ymfE,lit,intE,xisE,ymfI,ymfJ,cohE,croE,ymfL,ymfM,oweE,aaaE,ymfR,beeE,jayE,ymfQ,stfP,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,[ycgX]

GAACACTGGCAAAGAGATCGTCATTAAAGACGTGATTGCTGATGCATTCCTGCAACAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTT  >  NC_000913/1195929‑1196383                                                                                                                                                                                                                                                                                                  |                                                                                                                                                                        gAACACTGGCAAAGAGATCGTCATTAAAGACGTGATTGCTGATGCATTCCTGCAACAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGAAAATCCTGGCTCTAT‑TATTCTCTCCGTTGGG‑ATGTTTCTgcg                                                                                                                                                                         >  1:36148/1‑288 (MQ=255)    cacTGGCAAAGAGAGCGTCATTAAAGACGTGATTGCTGATGCATTCCTGCAACAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCcat                                                                                                                                                                     <  1:429737/289‑2 (MQ=255)         gCAAAGAGATCGTCATTAAAGACGTGATTGCTGATGCATTCCTGCAACAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGACCCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGCAATATGCCGGTCCGGACAAAGTAAATCCTGGCTCTATGTATAC‑CGCCGCTGAG‑ATGATGCGTCTCCATATggg                                                                                                                                                                >  2:739299/1‑289 (MQ=255)                  tCGTCATTAAAGACGTGATTGCTGATGCATTCCTGCAACAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGa                                                                                                                                                       <  1:124353/289‑1 (MQ=255)                  tCGTCATTAAAGAAGTGATGGCTGAGTCATTCCTGGAACAGATCCTGCTGCGTCCGGCTGAATATGATGGTATCGCCTGTATGAACCTGAACTGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTGGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGa                                                                                                                                                       <  1:730358/289‑1 (MQ=255)                   cGTCATTAAAGACGTGATTGCTGATGCATTCCTGCAACAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑AGGATTCTGCGCAACATGGGTTGGACTGaa                                                                                                                                                      >  2:574320/1‑289 (MQ=255)                         tAAAGACGTGATTGCTGATGCATTCCTGCAACAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGGAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCggat                                                                                                                                                >  1:141481/1‑287 (MQ=255)                            aGACGTGATTGCTGATGCATTCCTGCAACAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGAc                                                                                                                                             <  1:42535/289‑1 (MQ=255)                                   aTTGCTGATGCATTCCTGCAACAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCCCGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCAAT‑TATTCTAGCCGCTGAGCATG‑TGCTGGGCCATTAGGGTTGGACTGAAGCCGCCGAcgtga                                                                                                                                         >  2:229427/1‑282 (MQ=255)                                      gCTGATGCATTCCTGCAACAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTa                                                                                                                                   <  1:574320/289‑1 (MQ=255)                                       cTGATGCATTCCTGCAACAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGCAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCAGCTGGGTTTGACTGAAGCTGCTGAcctgatgtgtaa                                                                                                                                  >  2:404795/1‑278 (MQ=255)                                                    gCAACAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGACGCGGCTGACCTGATTGTTAAAGGTATGGAAGgc                                                                                                                     >  1:341991/1‑289 (MQ=255)                                                        cAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTACAGGTATGGAAGGCGCaa                                                                                                                 >  1:524122/1‑289 (MQ=255)                                                                  tgcGTACGGCTGAATCTGATGTTACCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAAtgcca                                                                                                        <  2:524122/288‑3 (MQ=255)                                                                    cGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGTGATGGAAGGCGCAATCAATGCCaag                                                                                                      >  1:173964/1‑287 (MQ=255)                                                                                       ttttcgctgggaggAACCTGAGCGGTGACTCAACGTCTGACGCGCGGGCAGCGCAGGTTGGCGGTTACGGTAACGCCACTGGTTCAAAAAGCGGTGACGAATGCGGCCTGTGTGAAGGCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGAGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGa                                                                                  <  2:586804/276‑1 (MQ=21)                                                                                                 tATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATGAATGCCAAGACCGTAACTTAGGACTTCGAACTTatgatg                                                                        >  2:158487/1‑289 (MQ=37)                                                                                                   tGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTgatgga                                                                      <  1:739299/289‑1 (MQ=255)                                                                                                                tGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAAtgcc                                                                                                         >  1:63770/1‑240 (MQ=255)                                                                                                                tGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAAtgcc                                                                                                         <  2:63770/241‑2 (MQ=255)                                                                                                                                gcctaggaaGCGCAGGTGTGCGGTATCGGTACCGCCCCTGGTGCAAAAAACGGTGACTAATGCGCCCTTGTTGAAGCCACCCACGGTACTGCGCCGAAATATGCGGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGGTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGt                                         <  2:34262/281‑1 (MQ=18)                                                                                                                                                             ttacgCCCCTGGTGCAAACATCTGGTACGAATTGGCCCGGTTTGAAGCCACCCACGGTACTGCGCCGAAATAGTCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCGCCGCTGAT‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTa             <  2:705911/285‑1 (MQ=17)                                                                                                                                                                 gCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCg                                                                                                  <  1:71043/199‑1 (MQ=37)                                                                                                                                                                 gCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCg                                                                                                  >  2:71043/1‑199 (MQ=37)                                                                                                                                                                    ccTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAAtctctcc     <  1:53895/289‑7 (MQ=18)                                                                                                                                                                       ggTGCAAACATCGGTTACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGCTTGCTAACGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTTATGGAAGGCGCTAAGCTGCTGAACTGTTCAGAGTTTGGTGAAGCGATCATCGCAAAGCTGTAATccctacatg  >  1:539992/1‑283 (MQ=18)                                                                                                                                                                                                                                     tGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGt                                                                              <  1:601886/151‑1 (MQ=17)                                                                                                                                                                                                                                     tGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGt                                                                              >  2:601886/1‑151 (MQ=17)                                                                                                                                                                                                                                                                                                  |                                                                                                                                                                        GAACACTGGCAAAGAGATCGTCATTAAAGACGTGATTGCTGATGCATTCCTGCAACAGATCCTGCTGCGTCCGGCTGAATATGATGTTATCGCCTGTATGAACCTGAACGGTGACTACATTTCTGACGCCCTGGCAGCGCAGGTTGGCGGTATCGGTATCGCCCCTGGTGCAAACATCGGTGACGAATGCGCCCTGTTTGAAGCCACCCACGGTACTGCGCCGAAATATGCCGGTCAGGACAAAGTAAATCCTGGCTCTAT‑TATTCTCTCCGCTGAG‑ATGATGCTGCGCCACATGGGTTGGACCGAAGCGGCTGACTTAATTGTTAAAGGTATGGAAGGCGCAATCAACGCGAAAACCGTAACCTATGACTTCGAGCGTCTGATGGATGGCGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAATGCCGTAGTT  >  NC_000913/1195929‑1196383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑