Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2798544	2799082	539	29 [26]	[26] 30	stpA/alaE	DNA binding protein, nucleoid‑associated/alanine exporter, alanine‑inducible, stress‑responsive

ATAGCGTTACCTCACCCCCAAACTTTCATTAGTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGTGAACATGTGTATTGAAGTTTTCCTCTCCGGAATGAGCTTCGAACAGTCTTTTTATTCCAGATTGGTAGCGATTCCGGTGAACATCTTAATTGCATGGCCATACGGTATGTACCGTGATCTGTTTATGCGCGCG  >  NC_000913/2798879‑2799370                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                                ataGCGTTACCTCACCCCCAAACTTTCATTAGTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGt                                                                                                                                                                                                             >  1:644932/1‑289 (MQ=255)                                                                                    atCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTAACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGACATGCAGTTGCAGATGCGTTCGCGATGGTTGTTTACTGTTCTTTCGTGAACATGAGTAtt                                                                                                                          >  1:365564/1‑289 (MQ=255)                                                                                                          tGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCAtctc                                                                                                                                                                                                                                                        >  2:63895/1‑141 (MQ=255)                                                                                                          tGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCAtctc                                                                                                                                                                                                                                                        <  1:63895/141‑1 (MQ=255)                                                                                                                                                aaaaaCTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCg                                                                                                                                                                                       <  2:578607/168‑1 (MQ=255)                                                                                                                                                aaaaaCTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCg                                                                                                                                                                                       >  1:578607/1‑168 (MQ=255)                                                                                                                                                   aaCTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGTGAACATGTGTATTGAAGTTTTCCTCTCCGGAATGAGCTTCGAACAGTCTTTTTATTCCAGATTGGTAGCGATTCCg                                                           <  1:26536/289‑1 (MQ=255)                                                                                                                                                       gACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGTGAACATGTGTATTGAAGTTTTCCTCTCCGGAATGAGCt                                                                                                 <  2:710579/247‑1 (MQ=255)                                                                                                                                                       gACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGTGAACATGTGTATTGAAGTTTTCCTCTCCGGAATGAGCt                                                                                                 >  1:710579/1‑247 (MQ=255)                                                                                                                                                       gACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGTGAACATGTGTATTGAAGTTTTCCTCTCCGGAATGAGCTTCGAACAGTCTTTTTATTCCAGATTGGTAGCGCTTCCGGTGa                                                       >  1:80725/1‑289 (MQ=255)                                                                                                                                                       gACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGATGGGTGTTTACTGTTCTGTCGTGAACATGTGTATTGAAGTTTTCCTCTCCGGAATGAGCTTCGAAAAGTCTTTTTATTCCAGATTGGTAGCGATTCCGGTGa                                                       >  1:392343/1‑289 (MQ=255)                                                                                                                                                         cTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGTGAACATGTGTATTGAAGTTTTCCTCTCCGGAATGAGCTTCGAACAGTCTTTTTATTCCAGATTGGTAGCGATTCCGGTGaa                                                      <  1:216390/288‑1 (MQ=255)                                                                                                                                                         cTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTACTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGTGACCATGTGTATTGAAGTTTTCCTCTCCGGATTGAGTTTCGATAAGTTTTTTTTTTCCAGATTTGTTGCGTTTCCGGtttac                                                     >  2:216390/1‑285 (MQ=255)                                                                                                                                                                              aTTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATCACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGTGACCATGTGTATTGAAGTTTTCCTCTCCGGAATGAGCTTCGAACAGTCTTTTTATTCCAGTTTGGTAGCGATTCCGGTGCACATCTTAATTGCATGGCCATAc                                >  1:24391/1‑289 (MQ=255)                                                                                                                                                                                         aTAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCa                                                                                                                                                                                                                      >  1:331905/1‑96 (MQ=255)                                                                                                                                                                                         aTAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCa                                                                                                                                                                                                                      <  2:331905/96‑1 (MQ=255)                                                                                                                                                                                            gCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCCTTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCATTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGTGAACTTGTGTATTGCCGTTTTCCTCTCCGGAATGAGCTTCGAACAGTCTTTTTATTCCCGATTGGTAGCGATTCCTGTGAAAATCTTAATTGATTTGCCATACGGTTTTTCCCGTGa                  >  2:673934/1‑289 (MQ=255)                                                                                                                                                                                             ccAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTTCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGTGAACATGTGTATTGAAGTTTTCCTCTCCGGAATGAGCTTCGAACAGTCTTTTTATTCCAGATTGGTAGCGATTCCGGTGAACATCTTAATTGCATGGCCATACGGTATGTACCGTGAt                 <  2:644932/289‑1 (MQ=255)                                                                                                                                                                                                 cGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAg                                                                                                                                                                                                                           >  1:489143/1‑83 (MQ=255)                                                                                                                                                                                                 cGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAg                                                                                                                                                                                                                           <  2:489143/83‑1 (MQ=255)                                                                                                                                                                                                 cGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGCTGGTTGTTTACTGTTCTGTCTTGAACATGTGTATTGAAGTTTTCCTCTCTGGAATGAGCTTCGAACAGTCTTTTTATTCCATATTGTTATCGATTCCGGTGAACATCTTAATTGCAGTTCCATACGGTATGGACCGTTATCTGt             >  2:703387/1‑289 (MQ=255)                                                                                                                                                                                                 cGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGTGAACATGTGTATTGAAGTTTTCCTCTCCGGAATGAGCTTCGAACAGTCTTTTTATTCCAGATTGGTAGCGATTCCGGTGAACATCTTAATTGCATGGCCATACGGTATGTACCGTGATCTGt             >  1:440320/1‑289 (MQ=255)                                                                                                                                                                                                 cGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGTGAACATGTGTATTGAAGTTTTACTCTCCGGATTGAGCTTCGCACAGTCTTTTTATTCACGTTTGGTAGCTATTCAGGTGTACCTCTTAATTGACTGTCCCTCCGGTCTGGAcctttgtcttg             >  2:583911/1‑280 (MQ=255)                                                                                                                                                                                                 cGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGCGAACATGTGTATTGAAGTTTTCCTCTCCGGAATGAGTTTCGAGCAGCCTTTTTATTCCAGATTGGTAGCGATTCCGCTTAACATTTGAATTGCATGGCTATACTGTTCGTAGAGTGAttgtt             >  2:472430/1‑285 (MQ=255)                                                                                                                                                                                                 cGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCAATACGCGTTTATTAAGGAGCATTAGCCTGTTCTCACCGCAGTCACGCTGGCGTCATGCAGTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGTGAACATGTGTATTGAAGTTTTCCTCTCCGGAATGAGCTTCGATCAGTCTTTTTCTTCAAGATTGGTATCGGTTCCGGTGCAAATCTTAATTGCATGGCCACACCGTAAGTACCGTTATCTGt             >  2:729387/1‑289 (MQ=255)                                                                                                                                                                                                            aTGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGTGAACATGTGTCTTGAAGTTTTCCTCTCCGGAATGAGCTTCGAACAGTCTTTTTATTCCAGATTGGTAGCGATTCCGGTGAACATCTTAATTGCATGGCCCTACGGTATGTACCGTGATCTGTTTATGcgcgcg  >  1:437677/1‑289 (MQ=255)                                                                                                                                                                                                             tGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCAtc                                                                                                                                                                                                                                                          <  2:160893/40‑1 (MQ=255)                                                                                                                                                                                                             tGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCAtc                                                                                                                                                                                                                                                          >  1:160893/1‑40 (MQ=255)                                                                                                                                                                                                             tGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACa                                                                                                                                                                                                                                                <  2:57939/50‑1 (MQ=255)                                                                                                                                                                                                             tGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACa                                                                                                                                                                                                                                                >  1:57939/1‑50 (MQ=255)                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                                ATAGCGTTACCTCACCCCCAAACTTTCATTAGTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCAGTCACGCTTGCGTCATGCAGTTGCAGATACGTTCGCGATGGTTGTTTACTGTTCTGTCGTGAACATGTGTATTGAAGTTTTCCTCTCCGGAATGAGCTTCGAACAGTCTTTTTATTCCAGATTGGTAGCGATTCCGGTGAACATCTTAATTGCATGGCCATACGGTATGTACCGTGATCTGTTTATGCGCGCG  >  NC_000913/2798879‑2799370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑