Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC NC_000913 1,198,576 IS2 (–) +5 bp 23.3% intergenic (‑339/‑115) ymfE ← / → lit e14 prophage; putative inner membrane protein/T4 phage exclusion protein; cell death peptidase, e14 prophage

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1198576 =120 (0.970)41 (0.330) 37/564 NT 25.1% intergenic (‑339/‑119) ymfE/lit e14 prophage; putative inner membrane protein/T4 phage exclusion protein; cell death peptidase, e14 prophage
?NC_000913 = 1469240 NA (NA)noncoding (1/1331 nt) IS2 repeat region
* ? NC_000913 = 1198580120 (0.970)32 (0.250) 29/564 NT 20.8% intergenic (‑343/‑115) ymfE/lit e14 prophage; putative inner membrane protein/T4 phage exclusion protein; cell death peptidase, e14 prophage
?NC_000913 1467910 = NA (NA)noncoding (1331/1331 nt) IS2 repeat region

CTCTCATTCTTCCTGACTCGGATATTAAAACCAGGTTCACTCACAACTGAAATTATAATTTTTTTGTCGTCAACTATCGTTTTAAGATCTTGCTCCTTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1198858‑1198576
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACA  <  NC_000913/1469240‑1468953
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
CTCTCATTCTTCCTGACTCGGATATTAAAACCAGGTTCACTCACAACTGAAATTATAATTTTTTTGTCGTCAACTATCGTTTTAAGATCTTGCTCCTTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAA                                                                                                                                                                                                                                                                                 >  1:621593/1‑300
             TGACTCGGATATTAAAACCAGGTTCACTCACAACTGAAATTATAATTTTTTTGTCGTCAACTATCGTTTTAAGATCTTGCTCCTTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACC                                                                                                                                                                                                                                                                    >  1:1076503/1‑300
                   GGATATTAAAACCAGGTTCACTCACAACTGAAATTATAATTTTTTTGTCGTCAACTATCGTTTTAAGATCTTGCTCCTTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATC                                                                                                                                                                                                                                                              >  1:1148870/1‑300
                                           CAACTGAAATTATAATTTTTTTGTCGTCAACTATCGTTTTAAGATCTTGCTCCTTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAA                                                                                                                                                                                                                                                    >  2:170702/1‑286
                                              CTGAAATTATAATTTTTTTGTCGTCAACTATCGTTTTAAGATCTTGCTCCTTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACT                                                                                                                                                                                                                                   <  1:338690/300‑1
                                                       TAATTTTTTTGTCGTCAACTATCGTTTTAAGATCTTGCTCCTTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAG                                                                                                                                                                                                                          >  1:941255/1‑300
                                                        AATTTTTTTGTCGTCAACTATCGTTTTAAGATCTTGCTCCTTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTA                                                                                                                                                                                                                                        >  2:1040820/1‑285
                                                          TTTTTTTGTCGTCAACTATCGTTTTAAGATCTTGCTCCTTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGCATTATCGACATGTTTAGAATATCTGTAGACTGGCTCCCTGACTCTCCACACAACCGATATCACTTATATAAGTGATAGTCTTACTA                                                                                                                                                                                                                                     >  2:1076076/1‑286
                                                                     TCAACTATCGTTTTAAGATCTTGCTCCTTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAG                                                                                                                                                                                                                          <  2:1007085/286‑1
                                                                          TATCGTTTTAAGATCTTGCTCCTTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAG                                                                                                                                                                                                                     <  2:945734/286‑1
                                                                          TATCGTTTTAAGATCTTGCTCCTTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAG                                                                                                                                                                                                                     <  2:696841/286‑1
                                                                                    AGATCTTGCTCCGTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGA                                                                                                                                                                                                           <  2:814109/286‑1
                                                                                          TGCTCCTTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAG                                                                                                                                                                                       <  1:194802/300‑1
                                                                                          TGCTCCTTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAT                                                                                                                                                                                                     <  2:551008/286‑1
                                                                                                  CTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATG                                                                                                                                                                                             <  2:827779/286‑1
                                                                                                      GGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGCTGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTT                                                                                                                                                                                         >  2:328315/1‑286
                                                                                                       GTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAAC                                                                                                                                                                           >  1:798585/1‑299
                                                                                                                   ATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAC                                                                                                                                                              <  1:371402/300‑1
                                                                                                                          TGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAG                                                                                                                                                       >  1:425035/1‑300
                                                                                                                          TGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTCAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACCGATGCTTGATGTCTTAGGGCCGGAGAAACGCAGAC                                                                                                                                                                     >  2:667189/1‑286
                                                                                                                           GAATTAATTGGTGAGAAAATAGTACGAAATGGTGAGCGCATTTTTCGTTAACCTCTACATTGTGGGGGTAGGTAGTAGATACAAAATAAGATGAATCTTCAGTTTTTTCGATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTACAGACAACCAATATCGCTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGGGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACG                                                                                                                                                                    <  2:1103029/286‑1
                                                                                                                                   TGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATC                                                                                                                                              <  1:948132/300‑1
                                                                                                                                    GCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATAGGAGAACAGATGATTGATGTTTTAGGGACGGAGAAACGAAGACGGCGTACAAC                                                                                                                                                           >  2:833414/1‑286
                                                                                                                                     CTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGC                                                                                                                                            >  1:123982/1‑300
                                                                                                                                                 GACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATC                                                                                                                                              <  2:703901/286‑1
                                                                                                                                                     AATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGC                                                                                                                                            >  2:33092/1‑284
                                                                                                                                                             AGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAt                                                                                                                                  >  2:310893/1‑285
                                                                                                                                                                GCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAATAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAG                                                                                                                               >  2:272661/1‑286
                                                                                                                                                                              ctTCTACATTGTTGTGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTGTTTTCTATGGTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAAGATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCC                                                                                                   <  1:1228371/298‑1
                                                                                                                                                                                         TTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGTTACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCG                                                                                         >  1:629912/1‑299
                                                                                                                                                                                          TGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTC                                                                                                     >  2:464531/1‑286
                                                                                                                                                                                                AGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAACGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTATCCCTCGTTGCCCGGCACCATG                                                                                 >  1:104591/1‑300
                                                                                                                                                                                                         tcttccgatctGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAG                                                                        <  1:799186/289‑1
                                                                                                                                                                                                          TACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAG                                                                        >  1:394733/1‑299
                                                                                                                                                                                                              AAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGC                                                                   <  1:525340/300‑1
                                                                                                                                                                                                                 TAAGATGAATCTTCAGTTTTGTCGATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGAATGGCCCACTGAATCTCCAGACAACAAATAACACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACGGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAG                                                                <  1:1167949/300‑1
                                                                                                                                                                                                                    GATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCACCATGGTGTAG                                                                           >  2:704429/1‑286
                                                                                                                                                                                                                             tccGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGCTGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTCTTTCTCTG                                                     >  1:967984/4‑299
                                                                                                                                                                                                                                                                     ATCAACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCT                          <  2:375404/286‑1
                                                                                                                                                                                                                                                                        GACATGTTTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCACGGCAACATGGTGTAGCAGCCAGCCCGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGGCTTAC                       >  2:25596/1‑286
                                                                                                                                                                                                                                                                         gtgtgctcttccgATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGG        <  1:1056904/287‑1
                                                                                                                                                                                                                                                                               TTAGAATATCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACA  <  1:40135/300‑1
                                                                                                                                                                                                                                                                                       TCTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTATTACTGCTGTCGCCGCCG         >  2:285617/1‑285
                                                                                                                                                                                                                                                                                          GTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGA     >  2:928165/1‑286
                                                                                                                                                                                                                                                                                          GTAGACTGGCCCCCTGAAGCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGGCGTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAG      <  2:640124/285‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
CTCTCATTCTTCCTGACTCGGATATTAAAACCAGGTTCACTCACAACTGAAATTATAATTTTTTTGTCGTCAACTATCGTTTTAAGATCTTGCTCCTTCTCTGGTGCAATCTTAAATGGTGATGAATTAATTGCTGAGAAAAGATGACAAATTGGTGAGCGCATTTTTCGTTAACCTCTACATTGTTGGGCTAGGTAGTATATACAAAATAAGATGAATCTTCAGTTTTTTCTATGTTCGATACTATATGCGTAATGAATTATCGACATGTTTAGAATATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1198858‑1198576
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACA  <  NC_000913/1469240‑1468953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.