Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4541549	4542014	466	25 [18]	[23] 24	[fimB]	[fimB]

GCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCGGTGGTAATGCCGGGTTGTCACTGGAGATTCATCCGCACATGTTACGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGACTTATCCAGGATTATCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTTATAGAGATAGTTGAGATACCAGGGATGGTGTTAAAAACTACATTATTCTTACGATATATCAAAAATGATTAACCATTTATTAATTGATGTTATTGTAAGTGTGATTCTTAATTATCATAATAAACATTAAGTTAACCATATCCATACAAAATACAATGGTTTATGTTCTTCAAAATAAATAAACAAAATCATTCATAAATTTAC  >  NC_000913/4541260‑4541759                                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                    gtggttatctaGTGGATTTTTTTCGCACTTAAGTGGTATACGCTTACTCGTCTACCGTTTGACCATCTTATCCCGACTGCCGTTCTTAATGCCGTGTTGTCACTGGAGATTCCTCCTCACGTGTTACTCCATTCGTGTGATTTTGCTTTTGCTAATATTTGATTAGTTACGCGACTTATCCAGGATTATCTTGGGCATCGCAATATTCGTCATACTGTCGGGTATACCGCCAGCAAAGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACg                                                                                                                                                                                                                     <  2:21264/279‑1 (MQ=255) gCTGAGTGCGTGTGGGTATTTTTATCACGTAAGGCGAATCCGCTTTCTCGGCAACATTTTTACCATTTTATTTCGCATTCCGGTGGTAATGCCGGGTTGTCACTGGAGATTCATCCGCACATGTTACGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGCTACGCGACTTATCCAGGATTATCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACg                                                                                                                                                                                                                     <  2:183022/289‑1 (MQ=255) gCTGAGGGCGAGGGGGTATTTTTATCACGTAAGGGGAATCCGCGTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCGGTGGTAATGCCGTGGTGGCACTGGAGATTCATCCGCACATGTTACGACATTCGTGTGGTTGTGCTTTGGCGAATATGGGAATAGATACGCGACTTATCCAGGATTATCTTGGGCATCGAAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACg                                                                                                                                                                                                                     <  2:206794/289‑1 (MQ=255) cgttagagCGCGTGGGTATTTGTTTCACTTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATGTTGTCTCGACTTCCGGTGGTAATGCCGGGTTGTCACTGGAGATTCATCCGCACATGTTACGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGACTTATCCAGGATTATCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACg                                                                                                                                                                                                                     <  2:505703/285‑1 (MQ=255)  cTGAGAGCGAGTGGGTATTTTTATCACGGAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCGGTGGTAATGCCGGGTTGTCACTGGAGATTCATCCGCACATGTTACGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGACTTATCCAGGATTATCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACg                                                                                                                                                                                                                     <  1:533455/288‑1 (MQ=255)          gAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCGGTGGTAATGCCGGGTTGTCACTGGAGATTCATCCGCACATGTTACGCCATTCGTGTGGTGTTGCTTTGGCGAATATGGGAATAGATACGCGACTTATCCAGGATTATCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTtat                                                                                                                                                                                                            <  2:166940/289‑1 (MQ=255)                gTATGTTTCTAACGTAAGGTGATTTCGTTTGTTCTGTAACATTTTTACCCTATCTTCGCGATGTCCTGGTGTAATTCCTTGTTGTCACTGGAGAGTCATCCGCCCATGTTACGCCATTCGTGTTGTTTTGCTTTGGGGAATATGAAAATAGATACTCTACTTCTCCACGATTATCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACATCTTCACGCTGTTTTATAGAGAt                                                                                                                                                                                                      <  2:643153/289‑1 (MQ=255)                                      aTCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCGGTGGTAATGCCGGGTTGTCACTGGAGATTCATCCGCACATGTTACGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGACTTATCCAGGATTATCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGGGCCAGAGGACGACAGCGTCACGCTGGTTTAGAGAGATAGTTGGGATACACGGGATGgtg                                                                                                                                                                                >  2:489626/1‑289 (MQ=255)                                       tCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCGGTGGTAATGCCGGGTTGTCACTGGAGATTCATCCGCACATGTTACGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGACTTATCCAGGATTATCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTTATAGAGATAGtt                                                                                                                                                                                                  >  1:570919/1‑270 (MQ=255)                                                  gtgaaaaGTTTTAACATATTATCTAGACTTCCGGTTGTTATTCCGGGTTGTCACTTGAGATTCATCCGGACATGTTATGACATTCGTGTGGTTTTTCTTTGGCGAATATTGGAAGAGATACGCGACTTATCCAGGATTATCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTTATAGAGATAGTTGAGATACCAGGGATGGTGTTAAAAACTACa                                                                                                                                                                    <  2:522821/283‑1 (MQ=255)                                                  ggacacatgtttACCTTGTTGTGTCGAGTTTCTGTGGTAATGCCGTTGTGTCACTTGGGAGTCAACCGGACATTTTGCGCCATTCTTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGACTTATCCAGGATTGTCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTTATAGAGATAGTTGAGATACCAGGGATGGTGTTAAAAACTACa                                                                                                                                                                    <  2:602015/280‑1 (MQ=255)                                                  ggCAACAGTTTTACCATATTATCTCGACTTCCGGTGGTAATGCCGGGTTGTCACTGGAGATTCATCCGCACATGTTACGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGACTTATCCAGGATTATCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTtata                                                                                                                                                                                                           >  1:467306/1‑250 (MQ=255)                                                     aaCAGTTTTACCATATTATCTCGACTTCCGGTGGTAATGCCGGGTTGTCACTGGAGATTCATCCGCACATGTTACGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGACTTATCCAGGATTATCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTTATAGAGATAGTTGAGATACCAGGGATGGTGTTAAAAACTACatt                                                                                                                                                                  <  1:489626/288‑1 (MQ=255)                                                           tttACCATATTATCTCGACTTCCGGTGGTAATGCCGGGTTGTCACTGGAGATTCATCCGCACATGTTACGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGACTTATCCAGGATTATCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTTATAGAGATAGTTGAGATACCAGGGATGGTGTTAAAAACTACATTATTCTTa                                                                                                                                                           <  1:508832/289‑1 (MQ=255)                                                                        ctgctcTTCCGGTGTTAATGCCGGGTTGTCACTAGAGATTCATCCGCACATGTTAAGCCATTCGTGTTGTTTTTCTTTGACGAATATGGGAATAGATACGCGACTTATCCAGGATTATCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTTATAGAGATAGTTGAGATACCAGGGATGGTGTTAAAAACTACATTATTCTTACGATATATCaaaa                                                                                                                                              <  1:518175/284‑1 (MQ=255)                                                                        ctcGACTTCCGGTGGTAATGCCGGGTTGTCACTGGAGATTCATCCGCACATGTTACGCCATGCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGACTTATCCAGGATTATCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTTATAGAGATAGTTGAGATACCAGGGATGGTGTTAAAAACTACATTATTCTTACGATATATCaaaa                                                                                                                                              <  1:236327/289‑1 (MQ=255)                                                                                                                                                                                                  ggCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTTATagagt                                                                                                                                                                                                       >  1:192910/1‑109 (MQ=255)                                                                                                                                                                                                  ggCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTTATAgaga                                                                                                                                                                                                       <  2:192910/110‑1 (MQ=255)                                                                                                                                                                                                         cAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACg                                                                                                                                                                                                                     >  1:668953/1‑89 (MQ=255)                                                                                                                                                                                                         cAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACg                                                                                                                                                                                                                     <  2:668953/89‑1 (MQ=255)                                                                                                                                                                                                                    aTACTGTCTGGTATAGCGCCAGCAATGCAGGTCGTTTTTACGGAATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTTATAGAGATAGTTGATATACCAAGGATTGTATTAAAAACTACATTATTCTTACGATATATCAAAAATGATTAACCATTTATTAATTGATGTTATTGTAAGTGTGATTCTTAATTATCATAATAAACATTAAGTTAACCATATCCATACAAAATACAATGGTTTATGTTCTTCAAAATAAATAAACAAAATCATTCATAAATTTac  <  1:668576/289‑1 (MQ=255)                                                                                                                                                                                                                                    cGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTTATAGAGATAg                                                                                                                                                                                                    <  1:99711/79‑1 (MQ=255)                                                                                                                                                                                                                                    cGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTTATAGAGATAg                                                                                                                                                                                                    >  2:99711/1‑79 (MQ=255)                                                                                                                                                                                                                                                                                gagGACGACAGCGTCTCGCTGTTTTATAGAGATAGTTGAGATACCAGGGATGGTGTTAAAAACTACatta                                                                                                                                                                 <  1:537501/70‑1 (MQ=255)                                                                                                                                                                                                                                                                                gagGACGACAGCGTCACGCTGTTTTCTAGAGATAGTTGAGATACCAGGGATGGTGTTAAAAACTACatta                                                                                                                                                                 >  2:537501/1‑70 (MQ=255)                                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                    GCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCGGTGGTAATGCCGGGTTGTCACTGGAGATTCATCCGCACATGTTACGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGACTTATCCAGGATTATCTTGGGCATCGCAATATTCGTCATACTGTCTGGTATACCGCCAGCAATGCAGGGCGTTTTTACGGCATCTGGGATAGAGCCAGAGGACGACAGCGTCACGCTGTTTTATAGAGATAGTTGAGATACCAGGGATGGTGTTAAAAACTACATTATTCTTACGATATATCAAAAATGATTAACCATTTATTAATTGATGTTATTGTAAGTGTGATTCTTAATTATCATAATAAACATTAAGTTAACCATATCCATACAAAATACAATGGTTTATGTTCTTCAAAATAAATAAACAAAATCATTCATAAATTTAC  >  NC_000913/4541260‑4541759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑