Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4539527	4540004	478	25 [21]	[22] 24	nanC/fimB	N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA

TCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGTCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGATCTTAGTTTAACTATTTGTTTTATAAATAATTTATTAAGAGTCTAAACAAGGGGAGCTTTGCAAGCTAACTCAGTGAGCTTGGTGAAAATCAGTGTTTACCCGCCATCAGGCTGAGCATAATTCTCATCATGAAATATGTTTCCTGGTTTGTGGCTTGTAACTGGTCACTTCTGAAGTCG  >  NC_000913/4539719‑4540257                                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                             tctGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCTCTTACTCAATCTATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATATCCTTTTCTTATTCCTTTAAGATTGACGTGCGTTTACATCACCGGATGACAAAGAACTGACGTGTTGTTTGACTTATATTTCGAGCTGCCCTGTCTGGTTGACTATCTTGGTTCCCTTTTATCCCTGTTATACTTTATCATAACTCAGGCCAACCGTACCACAACACCCGATTTCAAATTTCTCTCAAACAATAtctcc                                                                                                                                                                                                                                                            >  2:295605/1‑288 (MQ=255)                           cGTAAGCTATATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGTCTCTTTGACTATCTTGGTTCACCTTTATACCTGTTATACTAGATCACAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGCGTCACTAAATATGTCGATCTTTTTCTAAGAGGCAGATGc                                                                                                                                                                                                                                     >  1:195121/1‑286 (MQ=255)                                            aCTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGTCTCATTGACTATCTTGGTGCACCTTTATA‑CTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAacac                                                                                                                                                                                                                >  2:553663/1‑289 (MQ=255)                                                  tCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGTCTCATTGACTATCTTGTTGCACCTTTATACCTGTTATACCAGTTCAAAAATCACCCAATCCCGCACACAAAACCAGCTTTGCAATTTGTGTCACAATATTGTTAGATCTTTTTCTCACAGGACACTTCCATGTTAAGACAGACCGACACTTGCg                                                                                                                                                                                                           >  2:394850/1‑289 (MQ=255)                                                                               tGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGTCTCATTGACTATCTTGGTGCACCTTTATA‑CTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGATCTTAGttt                                                                                                                                                                             <  1:553663/289‑1 (MQ=255)                                                                                                                                                                                  gCCCTGTCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGATCTTAGTTTAACTATTTGTTTTATAAATAATTTATTAAGAGTCTAAACAAGGGGAGCTTTGCAAGCTAACTCAGTGAGCTTGGTGAAAATCAGTGTTTACCCGACa                                                                            >  1:583331/1‑288 (MQ=255)                                                                                                                                                                                  gCCCTGTCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTGCAAAAACTAAAGATCTTAGTTTAACTATTTGTTTTATAAATAATTTATTAAGAGTCTAAACAAGGGGATGTTTACATGCTAAACAAGTGAGCTTGGTGAAAATCTGTGTTTACCCGcgcg                                                                           >  2:292556/1‑286 (MQ=255)                                                                                                                                                                                        gaccATTCACCATCTTGGTGCCACTTGATACCTGTTATACCAAATAAAAAATCACTCAATCCATAAAACGAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGATCTTAGTTTAACTATTTGTTTTATAAATAATTTATTAAGAGTGTAAACAAGGGGAGCTTTGCAAGCTAACTCAGTGAGCTTGGTGAAAATCAGTGTTTACCCGCCATCAGGCt                                                                     <  2:195121/286‑1 (MQ=255)                                                                                                                                                                                                                         gTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGAt                                                                                                                                                                                     >  1:154444/1‑144 (MQ=255)                                                                                                                                                                                                                         gTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGAt                                                                                                                                                                                     <  2:154444/144‑1 (MQ=255)                                                                                                                                                                                                                         gTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGATCTTAGTTTAACTATTTGTTTTATAAATAATTTATTAAGAGTCTAAACAAGGGGAGCTTTGCAAGCTAACTCAGTTAGCTTGGTGAAAATAAGTGTTTACCCGCCATCAGGCTGAGCATAATTCTCATCATGAAATATGTTTCATg                                    >  2:109314/1‑289 (MQ=255)                                                                                                                                                                                                                         gTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGATCTTAGTTTAACTATTTGTTTTATAAATAATTTATTAAGAGTCTAAACAAGGGGAGCTTTGCAAGCTAACTCAGTGATCTTGGTGAAAATCAGTGTTTACCCTCCCTCAGGCTGAGCATAATTCTCATCATGACATATGTTTCCTg                                    >  2:420696/1‑289 (MQ=255)                                                                                                                                                                                                                                    tCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGATCTTAGt                                                                                                                                                                               >  1:355046/1‑139 (MQ=255)                                                                                                                                                                                                                                    tCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGATCTTAGt                                                                                                                                                                               <  2:355046/139‑1 (MQ=255)                                                                                                                                                                                                                                       aaaaTCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGATCTTAGTTTAACTATTTGTTTTATAAATAATTTATTAAGAGTCTAAACAAGGGGAGCTTTGCAAGCTAACTCAGTGAGCTTGGTGAATATCAGTGTTTACCCGCCATCAGGCTGAGCCTACTTCTCATCATGCAATATGTTCCCTGGTTTGTGGCTTGTa                      >  1:184388/1‑289 (MQ=255)                                                                                                                                                                                                                                              cGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGATCTTAGTTTAACTATTTGTTTTATAAATAATttatta                                                                                                                                                 >  1:56427/1‑159 (MQ=255)                                                                                                                                                                                                                                              cGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGATCTTAGTTTAACTATTTGTTTTATAAATAATttatta                                                                                                                                                 <  2:56427/159‑1 (MQ=255)                                                                                                                                                                                                                                                           acaaAACCAGATTTGCAATTCGTGTCACAACATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGATCTTAGTTTAACTATTTGTTTTATAAATAATTTATTAAGAGTCTAAACAAGGGGAGCTTTGCAAGCTAACTCAGTGAGCTTGGTGAAAATCAGTGTTTACCCGCCATCAGGCTGAGCATAATTCTCATCATGAAATATGTTTCCTGGTTTGTGGCTTGTAACTGGTCACTTCTGAAGTCg  <  1:292556/289‑1 (MQ=255)                                                                                                                                                                                                                                                            caaAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGATCTTAGTTTAACTATTTGTTTTATAAATAATTTATTAAGAGTCTAAACAAGGGGAGCTTTGCAAGCTAACTCAGTGAGCTTGGTGAAAATCAGTGTTTACCCGCCATCAGGCt                                                                     <  1:500146/221‑1 (MQ=255)                                                                                                                                                                                                                                                            caaAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGATCTTAGTTTAACTATTTGTTTTATAAATAATTTATTAAGAGTCTAAACAAGGGGAGCTTTGCAAGCTAACTCAGTGAGCTTGGTGAAAATCAGTGTTTACCCGCCATCAGGCt                                                                     >  2:500146/1‑221 (MQ=255)                                                                                                                                                                                                                                                             aaaaCCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACt                                                                                                                                                                                           >  2:100668/1‑102 (MQ=255)                                                                                                                                                                                                                                                             aaaaCCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACt                                                                                                                                                                                           <  1:100668/102‑1 (MQ=255)                                                                                                                                                                                                                                                                                               tCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTa                                                                                                                                                                                          <  1:383434/69‑1 (MQ=255)                                                                                                                                                                                                                                                                                               tCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTa                                                                                                                                                                                          >  2:383434/1‑69 (MQ=255)                                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                             TCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTCATTTTCATATTCCTTTCAGACTGAAGTGCGTTTTCATCACCCGATGAGAAAGAACTGAAGTGATGTTTGCCATAGATTGCGAGATGCCCTGTCTCATTGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAAAACCAGATTTGCAATTCGTGTCACAAAATATGTCGATCTTTTTCTAAGAGGAAGATGCCATGTGAAGCCAGACGAACACTTGCGGTGGTCTTCAAAAACTAAAGATCTTAGTTTAACTATTTGTTTTATAAATAATTTATTAAGAGTCTAAACAAGGGGAGCTTTGCAAGCTAACTCAGTGAGCTTGGTGAAAATCAGTGTTTACCCGCCATCAGGCTGAGCATAATTCTCATCATGAAATATGTTTCCTGGTTTGTGGCTTGTAACTGGTCACTTCTGAAGTCG  >  NC_000913/4539719‑4540257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑