New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1411899 =	92 (1.200)	5 (0.070)	5/492	6.6	7.0%	coding (50/936 nt)	ttcA	tRNA s(2)C32 thioltransferase, iron sulfur cluster protein
	?	NC_000913	= 1434958	50 (0.720)					pseudogene (51/51 nt)	ttcC	pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAA  >  NC_000913/1434671‑1435242                                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                             tatGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAACATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCGGATGATA‑TTTAACACATTGAAAAATAAGTAAAATCCTTATGCGTCAGAGCGTTGTGTTTTTTGCCCTTACt                                                                                                                                                                                                                                                                                             >  2:438423/1‑289 (MQ=255) tatGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGGGATTTTTGCCCTTACt                                                                                                                                                                                                                                                                                             >  1:265409/1‑289 (MQ=255)      cTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGTCAACAAAGGGGCAAATAAAGAGTGGCTTATCGTAGCTTATTGTTGTCGCGGATGATA‑TTTAAAACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTAATTTTTGCTGTTACTTGTTc                                                                                                                                                                                                                                                                                        >  2:310212/1‑289 (MQ=255)      cTTTGATAGGGCGGAATGATAGGGTTGGGAGTGATGTATCTGAAGAGTTGAAAAGCCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAAGTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTc                                                                                                                                                                                                                                                                                        <  2:412500/289‑1 (MQ=255)       tttGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCa                                                                                                                                                                                                                                                                                       >  1:659692/1‑289 (MQ=255)       tttGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATGTTTGTCGCTGATGATC‑TTTAACACATTGAAAACTAAGTAAAATACTTATGAGTCCGCAAGTTGTTATTTTTGACATTATTTGt                                                                                                                                                                                                                                                                                          >  2:717081/1‑286 (MQ=38)         tGAAGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACAGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAgg                                                                                                                                                                                                                                                                                     <  1:427648/289‑1 (MQ=255)                              aTGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTa                                                                                                                                                                                                                                                                >  2:196007/1‑289 (MQ=255)                                             cTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTAATTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGc                                                                                                                                                                                                                                                 >  1:363964/1‑289 (MQ=255)                                              tGAAGAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCg                                                                                                                                                                                                                                                <  1:52244/289‑1 (MQ=255)                                                     ttGAAAAACCGCAGTCACGTCGTATGCAATAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAGTGGCGCAAAACGCTGCAAAAGGCGCTAAACATGGGCACCAAAAGAGTGGATTATCGTGTCTTATTGTTTTAGCTGATGATA‑TTTAACCCTTTGAAAAATGAGAAAACTCGTGAGGAGTCAGAGAGTTTTGATTTTTGCCCTTACTTGTTCATGTTGTATGATTATGTCTTATGACTTttttgcttttgcttcatgta                                                                                                                                                                                                                                         >  2:732981/1‑281 (MQ=255)                                                               ccAGTCTCGTCGTGTTGCATAATGTTCTTCGGTTGGTTTTACTTTGATTGAGACGTTTTGTCATTTTTTTCGGTGGCAAAAATGGGTC‑AAACGCTGCAAAAGGTGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCa                                                                                                                                                                                                                              <  2:353164/288‑1 (MQ=255)                                                                  gTCACGTATGATGGAAGAACGTGCTGCGGTTGGTTGGACTGTAATTGAGACGTTTTGGAATTTTTTTCGGTGGAAAAAATGGGGCAAAAAGCGGCAAAAGGGGAAAAAAAGGAGCAAAAAAAGAGTGCATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAAt                                                                                                                                                                                                                            <  2:236527/289‑1 (MQ=255)                                                                    cACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAAt                                                                                                                                                                                                                            <  1:712670/287‑1 (MQ=255)                                                                     aCGTCGTATGCAAGATCGTTCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTGTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCg                                                                                                                                                                                                                         <  1:684300/289‑1 (MQ=255)                                                                                   aaCGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTGTTTGAATTTTTGTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCag                                                                                                                                                                                                           <  1:670807/289‑1 (MQ=255)                                                                                               ttggttTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCg                                                                                                                                                                                                <  1:235128/288‑1 (MQ=255)                                                                                                             attgaGACGTTTTGTAATTTTTTTCGGTGGAAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAATAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGcc                                                                                                                                                                                 <  2:70308/289‑1 (MQ=255)                                                                                                               tggaaCGTTTTGGAATGTTTTTAGGAGGCAAAAATGGGTGAAAACGCGGAAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGccc                                                                                                                                                                                <  2:495101/285‑1 (MQ=255)                                                                                                                 agaCGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAACAAAAGAGTGGAATATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTATTTCTAATTTCTTGATTTTGCGACATTTAACAGAGACTCAATTCGTTATATGGCATCAGCTGAGTAGGCGTCATTCGGGAACgtctcgc                                                                                                                                                                             >  2:433196/1‑283 (MQ=255)                                                                                                                 agaCGGTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAAAGGTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCGTATTGTTGTCGCTGATGATA‑TTTAACAAATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTGTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAg                                                                                                                                                                              <  2:255301/288‑1 (MQ=255)                                                                                                                             aTTTTTTTTGGTGGAAAAAATGGGGCAAATCGCTGTAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGTATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTg                                                                                                                                                                 <  2:17613/289‑1 (MQ=255)                                                                                                                                  tttCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGAtata                                                                                                                                                            <  1:196007/289‑1 (MQ=255)                                                                                                                                  tttCGGGTGAAAAAAGGGGGAAAAACGCTGCAAAAAGGGGAAAAAAGGGGCAAAAAAAGATTGGATTAGCGTAGTTTATTGTTGTCGCTTATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGAtata                                                                                                                                                            <  2:475789/289‑1 (MQ=255)                                                                                                                                         ggaaaaaaTGGGGCAAAACGTTGCAAAAGGGGAAAAAAAGAGGCAAAAAAAGAGTGGATTTTAGTAGCTTATTGATGGCGCTGATGATA‑TTTAACACAGTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGAGTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACt                                                                                                                                                     <  2:30762/286‑1 (MQ=255)                                                                                                                                              aaatgttgaataaCGTTGAAAAAGGGGCAAAAAAGTGGCAAAAAAAGAGTGGAGTATCTTAGCTTATTGTTGTCTCTGATGATA‑TTTAACATATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCACTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTTTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCATAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGc                                                                                                                                                <  1:242344/278‑1 (MQ=255)                                                                                                                                                              tGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATCAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGAtt                                                                                                                                >  2:583766/1‑289 (MQ=255)                                                                                                                                                                        ggaaaaaaggggcaaaaaaAGATTATATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGaa                                                                                                                       <  2:659692/286‑1 (MQ=255)                                                                                                                                                                                                         tAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCTACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAg                                                                                      >  1:467316/1‑288 (MQ=255)                                                                                                                                                                                                                ttgttgTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCgcagc                                                                              >  1:598922/1‑289 (MQ=255)                                                                                                                                                                                                                 tgttgtCACTTATGAAA‑TATAAAACAATGAAAAATAGTTATAATACGTATTAGTTTGATAGGTTTGATTTTTGCCCTTATTTTTTCAGGTTGTATTGTTATTTCTTACTAATTTCTTAATTTTGCGACAGTTAAAAGCTACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCgcagca                                                                             <  2:258162/289‑1 (MQ=255)                                                                                                                                                                                                                             tgatA‑TGTAAAAAATTGAAAAATAAGTAAAAGTCTTATGAGTCAGAGATTTGTGATTTTTGCCCTTACTTGTTCAGGTTGGATGGTTCTTTCTTACTAATTTCTGAATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGt                                                                 <  1:379822/289‑1 (MQ=255)                                                                                                                                                                                                                                          caTTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAgcgc                                                     <  1:64957/289‑1 (MQ=255)                                                                                                                                                                                                                                            ttGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGcac                                                   >  1:518760/1‑289 (MQ=255)                                                                                                                                                                                                                                             tGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGcaca                                                  >  1:131229/1‑289 (MQ=255)                                                                                                                                                                                                                                               aaaaaTAAGTTAAATACTTATGAGTTAGAGAGTTGTGATTTTTTCACTGATTTGGTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACAGTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTTATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCGGCAATGTGCGGGCGTTAGTGTCAGCGCACAAc                                                <  2:462666/289‑1 (MQ=255)                                                                                                                                                                                                                                                 aaaaaatataaaTTCTAATGAGTCAGTTAGTTATGATTGTTGACATTACTTGTTGAGGTTGTATTTGTCGTTCTTCCTAATTTCTAGATTTTGCGACATTTAAACGCGACACAATTCGTTATATGGCATAAGAAAAGTAGGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGAAATAAAAAACTGGGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCa                                              <  2:265409/280‑1 (MQ=255)                                                                                                                                                                                                                                                 aaaTAAGTAAAATACTTATGAGTCATAGTGTTATTATTTTTGCCCTTACTTGTTCATGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATAGGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCa                                              <  1:433196/289‑1 (MQ=255)                                                                                                                                                                                                                                                      aGTAAATTTCTTATGAGTCAGATGGTTGTGATTTTTTGCCTTACTTGTTCAGGTTGTATTGTTCTTTATTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACg                                         <  2:545561/289‑1 (MQ=255)                                                                                                                                                                                                                                                         agatgatttATGAGTCAGAGAGTTGTGATTGTTGCCCTTACTTTGTCAGGTGGTATTGTTCTTTCTTACTAATTTCTGTATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAACCTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAg                                      <  2:350989/282‑1 (MQ=255)                                                                                                                                                                                                                                                         aaaaTACGTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTTTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACgg                                        <  1:636092/287‑1 (MQ=255)                                                                                                                                                                                                                                                             tcgttATGAGGAAGGGAGTGTTGAATTTTGCCCTTACTTTTTAAGGTTGTATTGTTCTTTCTTACTAATTTCTTGAGTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCAct                                  <  2:29582/286‑1 (MQ=255)                                                                                                                                                                                                                                                               cTTATTAGTCATAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTGTATTTTGCGACATTTAAAAGCGACGCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCActct                                <  1:434464/289‑1 (MQ=255)                                                                                                                                                                                                                                                                  aTGTGTCAGAGTCTTGTTGTTTTTGACCTTACTTTTTCAGTTTGTATTGTTCTTTCTTACTAATTTATTGATGTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCg                             <  2:363964/289‑1 (MQ=255)                                                                                                                                                                                                                                                                  aTGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCg                             <  1:75745/289‑1 (MQ=255)                                                                                                                                                                                                                                                                  aTGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGAGTAGATGGGAAACTGTCAGCACATGTGCGAAATGAATCAAAAAGCCCGCAGCAATGTTCGGGCGTTAGTGTCGGCGCCCAACCAGCACGGAGCACGCTGCg                             >  2:610024/1‑289 (MQ=255)                                                                                                                                                                                                                                                                       tCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGACCGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAAGGTCAGCACATTTGCGACATGAATCAAAACGCCCGCAGCAATGTACGGGAGTTATTGTCAGCGCACAACCAGCACGGACAACCCTGCggtac                         >  2:114928/1‑284 (MQ=255)                                                                                                                                                                                                                                                                       tCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCACAGCAATGTGCGGGCTTTAGCGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGaa                         >  2:458007/1‑287 (MQ=255)                                                                                                                                                                                                                                                                         agagagTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGaa                                                                                                   <  2:167970/212‑1 (MQ=255)                                                                                                                                                                                                                                                                         agagagTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGaa                                                                                                   >  1:167970/1‑212 (MQ=255)                                                                                                                                                                                                                                                                         agagagTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGAAGCAATGTGCGGGCGTTAGTGTCAGGGCACAACCAGCACGGAGCACTCTGAGTCACgg                       >  2:341660/1‑287 (MQ=255)                                                                                                                                                                                                                                                                                tgtgATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAACAACTGTGGCGTGTATGGTCCGGATTAGAGGGGAAAATGTCATCACATTTGCGAAATGAATTAAAAAGCCGGCAGCAATGTGCTGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTTTGcttcaactcctacag                >  2:578896/1‑274 (MQ=255)                                                                                                                                                                                                                                                                                tgtgATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGc               >  1:172845/1‑289 (MQ=255)                                                                                                                                                                                                                                                                                    aTTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATTTCAGCACCTTTGCGAAATGAATCAAAAATCCCGCAGCACTGTTCGGGCGTTAGCGTCAGCGCCCAACCAGCCCGGAGCCCCCTGCGTGCCGCCCGACAGcccgc           >  2:256844/1‑285 (MQ=255)                                                                                                                                                                                                                                                                                         tGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATACAAAACTGTGGCGTGTATGGTACGGAGTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAACAAGCCCGCAGCAATGTGCGTGCTTTAGTGTCAGCGCACAACCAGCACGTGGCACTCTCCGTTACCCACCACAGGTTCGGCGtt      >  2:517332/1‑289 (MQ=255)                                                                                                                                                                                                                                                                                         tGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCGCGGAGCACTCTGCGTGCAGAACTACAGATGCGGAGtt      >  1:290663/1‑289 (MQ=255)                                                                                                                                                                                                                                                                                             cTTACTTGTTCAGGTTTTATTGTTCTTTCTTACTAATTTCTTGATTTTGCAACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGaa  <  1:498888/289‑1 (MQ=255)                                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                             TATGCCTTTGATGCGGAGGAATGAATGTGATGGGAGTGATGTATCTGAATAGTTGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATA‑TTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAA  >  NC_000913/1434671‑1435242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.