mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 30 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4583137 | 127 (1.190) | 3 (0.030) | 3/552 | NT | 2.5% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 109 (1.040) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | 4542682 = | 125 (1.170) | 7 (0.070) | 7/546 | NT | 5.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 146 (1.410) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4317083 = | 101 (0.940) | 3 (0.030) | 3/548 | NT | 3.0% | coding (136/1137 nt) | phnM | ribophosphonate triphosphate hydrolase |
| ? | NC_000913 | 4317120 = | 95 (0.910) | coding (99/1137 nt) | phnM | ribophosphonate triphosphate hydrolase | |||||
| * | ? | NC_000913 | 4261344 = | 143 (1.340) | 2 (0.020) | 4/554 | NT | 1.5% | intergenic (+38/‑325) | yjbM/dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| ? | NC_000913 | 4261374 = | 127 (1.210) | intergenic (+68/‑295) | yjbM/dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A | |||||
| * | ? | NC_000913 | 3954266 = | 103 (0.960) | 3 (0.030) | 4/550 | NT | 2.9% | coding (789/1851 nt) | ilvD | dihydroxyacid dehydratase |
| ? | NC_000913 | 3954282 = | 97 (0.930) | coding (805/1851 nt) | ilvD | dihydroxyacid dehydratase | |||||
| * | ? | NC_000913 | = 3936737 | 101 (0.940) | 3 (0.030) | 3/556 | NT | 2.7% | coding (460/891 nt) | rbsB | D‑ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor |
| ? | NC_000913 | = 3936802 | 117 (1.110) | coding (525/891 nt) | rbsB | D‑ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor | |||||
| * | ? | NC_000913 | 3777891 = | 116 (1.080) | 4 (0.040) | 4/544 | NT | 3.7% | coding (493/1656 nt) | lldP | L‑lactate permease |
| ? | NC_000913 | 3778056 = | 97 (0.940) | coding (658/1656 nt) | lldP | L‑lactate permease | |||||
| * | ? | NC_000913 | 3516410 = | 128 (1.200) | 4 (0.040) | 4/550 | NT | 3.1% | coding (897/1287 nt) | damX | cell division protein that binds to the septal ring |
| ? | NC_000913 | 3516478 = | 128 (1.230) | coding (829/1287 nt) | damX | cell division protein that binds to the septal ring | |||||
| * | ? | NC_000913 | 3492352 = | 121 (1.130) | 3 (0.030) | 3/554 | NT | 2.5% | intergenic (‑55/‑216) | ppiA/tsgA | peptidyl‑prolyl cis‑trans isomerase A (rotamase A)/putative transporter |
| ? | NC_000913 | 3492369 = | 115 (1.090) | intergenic (‑72/‑199) | ppiA/tsgA | peptidyl‑prolyl cis‑trans isomerase A (rotamase A)/putative transporter | |||||
| * | ? | NC_000913 | = 3479945 | 91 (0.850) | 3 (0.030) | 3/554 | NT | 3.3% | coding (663/1806 nt) | kefB | potassium:proton antiporter |
| ? | NC_000913 | = 3479978 | 87 (0.830) | coding (630/1806 nt) | kefB | potassium:proton antiporter | |||||