mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,190 | 0 | A | G | 35.0% | 6.2 / 12.1 | 20 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 35.0% | 7.4 / 13.0 | 20 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 27.3% | 51.4 / 18.0 | 34 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 526,792 | 0 | A | C | 23.6% | 227.3 / 52.7 | 108 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 526,796 | 0 | C | G | 21.7% | 284.1 / 64.3 | 107 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 526,800 | 0 | A | G | 20.9% | 240.2 / 50.7 | 105 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 65 (0.840) | 13 (0.180) | 12/492 | 4.6 | 18.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 51 (0.700) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 64 (0.820) | 10 (0.140) | 10/492 | 5.3 | 15.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 50 (0.680) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 2319247 | 78 (1.000) | 5 (0.070) | 4/508 | 8.1 | 6.4% | coding (630/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| ? | NC_000913 | = 2319264 | 70 (0.930) | coding (613/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN | |||||
| * | ? | NC_000913 | = 3832187 | NA (NA) | 4 (0.050) | 4/524 | 8.3 | 4.5% | noncoding (10/27 nt) | REP277 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP277 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3867075 | 84 (1.080) | coding (348/414 nt) | ibpA | heat shock chaperone | |||||
| * | ? | NC_000913 | = 3668117 | 64 (0.840) | 9 (0.120) +ACC |
3/504 | 8.7 | 12.1% | coding (1072/1398 nt) | yhjA | putative cytochrome C peroxidase |
| ? | NC_000913 | 3668118 = | 66 (0.850) | coding (1071/1398 nt) | yhjA | putative cytochrome C peroxidase | |||||
| * | ? | NC_000913 | 3067310 = | 78 (1.000) | 3 (0.040) | 3/504 | 8.7 | 3.9% | intergenic (‑137/+30) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| ? | NC_000913 | 3067334 = | 71 (0.950) | intergenic (‑161/+6) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein | |||||
| * | ? | NC_000913 | = 3050635 | 72 (0.950) | 6 (0.080) +TGT |
3/504 | 8.7 | 7.6% | coding (33/1095 nt) | gcvT | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex |
| ? | NC_000913 | 3050636 = | 73 (0.940) | coding (32/1095 nt) | gcvT | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex | |||||
| * | ? | NC_000913 | 4106361 = | 68 (0.870) | 3 (0.040) | 3/508 | 8.8 | 4.2% | intergenic (+41/‑108) | cpxP/fieF | inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter |
| ? | NC_000913 | 4106380 = | 72 (0.950) | intergenic (+60/‑89) | cpxP/fieF | inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter | |||||
| * | ? | NC_000913 | = 1737510 | 71 (0.910) | 3 (0.040) | 3/512 | 8.8 | 4.0% | coding (36/90 nt) | ynhF | stress response membrane |
| ? | NC_000913 | = 1741312 | 76 (1.000) | intergenic (+190/‑101) | ydhC/cfa | putative arabinose efflux transporter/cyclopropane fatty acyl phospholipid synthase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 1387098 | 89 (1.140) | 5 (0.070) | 3/512 | 8.8 | 6.3% | coding (379/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
| ? | NC_000913 | = 1387248 | 62 (0.820) | coding (529/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase | |||||