Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,075,154 Δ2 bp coding (486‑487/786 nt) yihW → putative transcriptional regulator for sulphoquinovose utilization

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,075,1540G.100.0% 295.8 / NA 66coding (486/786 nt)yihWputative transcriptional regulator for sulphoquinovose utilization
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (40/26);  total (40/26)
*NC_0009134,075,1550T.100.0% 295.8 / NA 66coding (487/786 nt)yihWputative transcriptional regulator for sulphoquinovose utilization
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (40/26);  total (40/26)

GTTCGAGCAGCGTGAGGTTTCGCAAACCGAGGAAAAAAAAGCGATTGCCGAAGCGGTGGCAGACTATATTCCTGATGGTTCAACAATATTTATCACCATTGGTACGACTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGCGTCCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTGCGCTCTTTACCGACGAGCTGCCGCCCGCTGCGCTAAAATCACGCTTACAAGACAGCCAAATTGAAATCATT  >  NC_000913/4074881‑4075433
                                                                                                                                                                                                                                                                                 ||                                                                                                                                                                                                                                                                                       
gTTCGAGCAGCGTGAGGTTTCGCAAACCGAGGAAAAAAAAGCGATTGCCGAAGCGGTGGCAGACTATATTCCTGATGGTTCAACAATATTTATCACCATTGGTACGACTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGAttt                                                                                                                                                                                                                                                                         >  1:204503/1‑289 (MQ=255)
   cgtgcagcGTGAGGTTGCGCAAACCAAGGAAAAAAAAGCGATTGCCGAAGCGGTGGCAGACTATATTCCGGTTGGTTCAACAAGATTTATCACCATTGGTACGACTGTTGAGCATGTTGCCCGGGCATTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCg                                                                                                                                                                                                                                                                      <  2:725897/286‑1 (MQ=255)
       cagcGTGAGGTTTCGCAAACCGAGGAAAAAAAAGCGATTGCCGAAGCGGTGGCAGACTATATTCCTGATGGTTCAACAATATTTATCACCATTGGTACGACTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGc                                                                                                                                                                                                                                                                   <  1:773655/288‑1 (MQ=255)
       aagagggAGGTTTCGCAAACCGAGGAAAAAAAAGCGATTGCCGAAGCGGTGGCAGACTATATTCCTGATGGTTCAACAATATTTATCACCATTGGTACGACTGTTGAGCATGTTTCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGc                                                                                                                                                                                                                                                                   <  2:428536/282‑1 (MQ=255)
                     gCAAAACGAGGAAAAAAAGTCGAATGCCGAAGCGGTGGCATCGTCTATTGCTGATGGTTCAACAATATTTATCACCATGGGTACGACGGTGTAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGTATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAAc                                                                                                                                                                                                                                                    <  2:370186/289‑1 (MQ=255)
                                 aaaaaaaGCGTTTGCCGAAGCGGTGGCAGACTATATTTCTGATGGTTCAACAATATTTATCACCATTGGTACGACTGTTGAGCATGTGGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATAGTCTTTACCACAACCCGCGCGTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTGGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTgggg                                                                                                                                                                                                                                         <  2:805391/288‑1 (MQ=255)
                                          gATTGCCGAAGCGGTGGCAGACTATATTCCTGATGGTTCAACAATATTTATCACCATTGGTACGACTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGCAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGACCTTCATGGGC‑‑CCGTTGGGGCTGATTTTCGTGCGGCGTGTCTGGTAACACGCGTGGGGGCgtgtga                                                                                                                                                                                                                                  >  2:243167/1‑281 (MQ=255)
                                                                          aTGGTTCAACAATATTTATCACCATTGGTACGACTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGCTTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGGTGATGGAGTTTGATGTAAACg                                                                                                                                                                                               >  1:154153/1‑289 (MQ=255)
                                                                          aTGGTTCAACAATATTTATCACCATTGGTACGACTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTTCGGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGAGAGTGCGGGTTGATGGAggctcattaagacg                                                                                                                                                                                               >  2:185081/1‑276 (MQ=255)
                                                                          aTGGTTCAACAATATTTATCACCATTGGTACGACTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATTTAAACg                                                                                                                                                                                               >  1:76571/1‑289 (MQ=255)
                                                                          aTGGTTCAACAATATTTATCACCATTGGTACGACTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGACCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGGTTGAGAGCGATGGCGCGTTGATGGCGTTTGATGTAAACg                                                                                                                                                                                               >  1:197382/1‑289 (MQ=255)
                                                                          aTGGTTCAACAATATTTATCACCATTGGTACGACTGTTGAGCATGTTGCCCGGGCGTTACTTAACAATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAAAAAGCGTTGGGGGGATGGGGAGAGATGGCGCGTTGATGGAGTTTGATGGAAACg                                                                                                                                                                                               >  1:96572/1‑289 (MQ=255)
                                                                              ttCAACAATATTTTTCACCATTGGTACGACTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGt                                                                                                                                                                                                           <  2:574279/273‑1 (MQ=255)
                                                                              ttCAACAATATTTATCACCATTGGTACGACTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGt                                                                                                                                                                                                           >  1:574279/1‑273 (MQ=255)
                                                                                                 aTTGGTACGACTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGgcg                                                                                                                                                                                                                       >  1:643915/1‑242 (MQ=255)
                                                                                                 aTTGGTACGACTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGgcg                                                                                                                                                                                                                       <  2:643915/242‑1 (MQ=255)
                                                                                                       aCGACTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGgcg                                                                                                                                                                  <  1:91421/289‑1 (MQ=255)
                                                                                                          aCTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAGACGAAGCTAACGTGGTGAAAACGATGATGGCGCAc                                                                                                                                                               >  1:197116/1‑289 (MQ=255)
                                                                                                          aCTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAACTGTTGGGGGCATTTAGAGCGATGGCGCGGTGATGGAGTTTGATGTAAACGGAGCTAAAGTGGTGAAAACGGTGGTGGCTCaa                                                                                                                                                               >  1:388261/1‑288 (MQ=255)
                                                                                                              ttGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGCTGATGGCGCaaggga                                                                                                                                                           >  1:375589/1‑284 (MQ=255)
                                                                                                                     tGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTAATGTGATTGAGGTAAACGAAACTCACCTGGTGGAACACATGATGGCGGCAGGGAGAAatct                                                                                                                                                   >  1:577383/1‑286 (MQ=255)
                                                                                                                                         aCCATGATCATTGGAGGAAAATCACCAACGGCCTGTGTGTGGCGCATATTCTGTACCACATCCCGCGCTTTGAAGTGTTGGTTCCCGGCGTTACGTTGCGCTCTCATAATATCGGGATCATTGGCACTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATcaca                                                                                                                               <  2:76571/289‑1 (MQ=255)
                                                                                                                                         aCCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGCGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGGTGATGGGGCACGCGAGAAATATTCTGCTGGTCGCCGAGcaca                                                                                                                               >  2:284202/1‑289 (MQ=255)
                                                                                                                                             tAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAAc                                                                                                                                                                                                                                                    >  2:92966/1‑169 (MQ=255)
                                                                                                                                             tAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAAc                                                                                                                                                                                                                                                    <  1:92966/169‑1 (MQ=255)
                                                                                                                                                   tttGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCCGGTAACAAGCGCCGGGGCGATTGAGAGCTAGGGCGCGTTGATGGCGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGGGCACGCGACAAATATTCTGATGGTCGACGACTACACGATGTacct                                                                                                                     >  1:21521/1‑286 (MQ=255)
                                                                                                                                                    ttGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGGTGGCTCGTTTATGGCGGTTGATGTAAACGAAGCTAAAGTGGGTAAAACGATGATGGCCGACGAGGAGAAATTTATCGTTGTCGCCGATCACACGAAGTAACAt                                                                                                                    >  2:263302/1‑289 (MQ=255)
                                                                                                                                                            aaTCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCCCACTAAGTATCATGCTTcggc                                                                                                            >  1:437578/1‑289 (MQ=255)
                                                                                                                                                                    aCAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGTGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACCCTAAGTATCATTCTTCGGCGGCGGTTg                                                                                                    >  1:569727/1‑289 (MQ=255)
                                                                                                                                                                        ccTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGCTGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGAGCACAAGAAGTATCATGCTTCGGCGGCGGTTGACAt                                                                                                >  2:722617/1‑289 (MQ=255)
                                                                                                                                                                          tGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAACCGAAGGTAACGTGGTGAAAACGATGATGGGGCACGCGAGAAATATTATGCTGGTCGCCGATCACACTCAGTCTAATGCTTCTGCGGCGGTTGAAATTg                                                                                              >  2:601747/1‑289 (MQ=255)
                                                                                                                                                                          tGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACt                                                                                                                             >  1:272608/1‑258 (MQ=255)
                                                                                                                                                                          tGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACt                                                                                                                             <  2:272608/258‑1 (MQ=255)
                                                                                                                                                                            cGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGaaaa                                                                                                                                                                             <  1:271798/209‑1 (MQ=255)
                                                                                                                                                                            cGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGaaaa                                                                                                                                                                             >  2:271798/1‑209 (MQ=255)
                                                                                                                                                                            cGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCAc                                                                                                                                                               <  2:702621/223‑1 (MQ=255)
                                                                                                                                                                            cGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCAc                                                                                                                                                               >  1:702621/1‑223 (MQ=255)
                                                                                                                                                                                  gcgcATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTGGATGTAAATGCAGCTATCGTGGTGAAAAAGATTTTGGGGCACGCGCGTATTATTCAGTTGGTCTCCGTTCACGCTATGTATTCTGACTCGGCTGCTGTTGAACTTGGTACCggt                                                                                      >  2:779420/1‑287 (MQ=255)
                                                                                                                                                                                      atatTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGca                                                                                   <  1:284202/288‑1 (MQ=255)
                                                                                                                                                                                      atatTCTTTACCACAACCCGCGCTTTGAAGTGATGGGGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGca                                                                                   <  1:779420/288‑1 (MQ=255)
                                                                                                                                                                                               aCCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCAcgc                                                                                                                                                            <  1:588288/206‑1 (MQ=255)
                                                                                                                                                                                               aCCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCAcgc                                                                                                                                                            >  2:588288/1‑206 (MQ=255)
                                                                                                                                                                                                 cccaACCCGGGCTTTGAGGTGATGGGGCCCGGGGGTAGTTTGCGCTCTCATAATAGCGGGATCATTGGGCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTgcg                                                                       <  2:204503/287‑1 (MQ=255)
                                                                                                                                                                                                 cccaACCCGCGCTTTGAAGTGTGGGTGCCCGGCTGGACGTTGTGCTTTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGACACAGGTCACTgcg                                                                       <  2:79900/287‑1 (MQ=255)
                                                                                                                                                                                                 cacaACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCAGGCTTCGGCGGGGGGTGAAATTGGTAACGGGGCGCGGGTccatgc                                                                        >  2:176036/1‑283 (MQ=255)
                                                                                                                                                                                                    aaCCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTgcgc                                                                      >  1:148643/1‑287 (MQ=255)
                                                                                                                                                                                                      cccGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGCTTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATTGCGCCCGCGCGAAATATTCTGCTGGTCGCCGATACCACTAAGTTTCATGCTTCTGCGGCGGTGGGAATTGGTAACGTGGCACAGTTAACTgtgccatt                                                                  >  2:93115/1‑285 (MQ=255)
                                                                                                                                                                                                      cccGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCgag                                                                                                                                                         <  2:334206/202‑1 (MQ=255)
                                                                                                                                                                                                      cccGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCgag                                                                                                                                                         >  1:334206/1‑202 (MQ=255)
                                                                                                                                                                                                          cgcTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGAt                                                                                                                                                                                                                <  2:32797/144‑1 (MQ=255)
                                                                                                                                                                                                          cgcTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGAt                                                                                                                                                                                                                >  1:32797/1‑144 (MQ=255)
                                                                                                                                                                                                                gAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCGTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTGCGCTCTTTACCGACGAg                                                        <  1:83807/289‑1 (MQ=255)
                                                                                                                                                                                                                               ggcggTACGTTGGGCTCGCATAATGGAGGGATCATTTGGCCTGCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATGTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTGCGCTCTTTACCGACGAGCTGCCGCCCGCTgcg                                         <  2:437578/289‑1 (MQ=255)
                                                                                                                                                                                                                                    tACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGt                                                                                                                                                                                                                                              <  1:818095/88‑1 (MQ=255)
                                                                                                                                                                                                                                    tACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGt                                                                                                                                                                                                                                              >  2:818095/1‑88 (MQ=255)
                                                                                                                                                                                                                                           cgcTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTGCGCTCTTTACCGACGAGCTGCCGCCCGCTGCGCTAAAATCAc                               >  1:11015/1‑287 (MQ=255)
                                                                                                                                                                                                                                                       aGCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGCTGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTGCGCTCTTTACCGACGAGCTGCCGCCCTCTGCGCTAAACTCAAGCTTACAAGAcct                  >  2:93084/1‑286 (MQ=255)
                                                                                                                                                                                                                                                        gCGGGATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTGCGCTCTTTACCGACGAGCTGCCGCCCCCTGCGCTCAACTCCACCTTACAAGACAGca                >  2:395271/1‑288 (MQ=255)
                                                                                                                                                                                                                                                           ggATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGCTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTGCGCTCTTTACCGACGAGCTGCCGCCCGCTGCGCTAAAATCACGCTTACAAGACAGCCaaa             >  1:217569/1‑289 (MQ=255)
                                                                                                                                                                                                                                                            gATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCCCAGGTCACTGCGCTCTTTACCGACGAGCTGCCGCCCGCCGCGCTCCAACCACGCTTTCAACACAGCCAAAt            >  2:283942/1‑289 (MQ=255)
                                                                                                                                                                                                                                                            gATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTGCGCTCTTTACCGACGAGCTGCCGCCCGCTGCGCTAAAATCAc                               <  1:692348/270‑1 (MQ=255)
                                                                                                                                                                                                                                                            gATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTGCGCTCTTTACCGACGAGCTGCCGCCCGCTGCGCTAAAATCAc                               >  2:692348/1‑270 (MQ=255)
                                                                                                                                                                                                                                                            gATCATTGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTGCGCTCTTTACCGACGAGCTGCCGCCCGCTGCGCTAAAATCACGCTTCCAAGCCAGCCAAAt            >  1:41062/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                  tGGCCCTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCCCTGCGCCCTTTACCGACGAGCTGCCGCCCGCTGCGCTAAAATCACGCTTACAAGAAAACCAACTTGAAAt      >  2:654758/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                      ccTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTGCGCTCTTTACCGACGAGCTGCCGCCCGCTGCGCTAAAATCACGCTTACAAGACAGCCAAATTGAAATCAtt  <  1:243167/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                      ccTTCAGCGGC‑‑CCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTGCGCTCTTTACCGACGAGCTGCCGCCCGCTGCGCTAAAATCACGCTTACAAGACAGCCAAATTGAAATCAt   <  1:176036/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 ||                                                                                                                                                                                                                                                                                       
GTTCGAGCAGCGTGAGGTTTCGCAAACCGAGGAAAAAAAAGCGATTGCCGAAGCGGTGGCAGACTATATTCCTGATGGTTCAACAATATTTATCACCATTGGTACGACTGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCAGCGGCGTCCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTGCGCTCTTTACCGACGAGCTGCCGCCCGCTGCGCTAAAATCACGCTTACAAGACAGCCAAATTGAAATCATT  >  NC_000913/4074881‑4075433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: