mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 42.1% | 24.2 / 39.6 | 44 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,286 | 0 | C | T | 26.2% | 65.1 / 19.0 | 42 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,875,522 | 0 | C | G | 23.9% | 87.3 / 15.4 | 46 | L29V (CTG→GTG) | yidX | putative lipoprotein |
| * | NC_000913 | 4,296,304 | 0 | A | C | 23.7% | 58.1 / 19.9 | 38 | intergenic (+510/+132) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 22.9% | 28.4 / 10.5 | 35 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,303 | 0 | A | G | 21.1% | 63.3 / 13.7 | 38 | intergenic (+509/+133) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 39 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2067342 = | 93 (1.320) | 15 (0.220) +TAAGT |
7/536 | 6.2 | 14.1% | noncoding (12/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2101766 = | NA (NA) | noncoding (1178/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 2066159 = | NA (NA) | 8 (0.120) | 6/514 | 6.4 | 8.6% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2067354 = | 86 (1.280) | intergenic (‑33/+6) | insH1/yoeG | IS5 transposase and trans‑activator/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 762116 = | 68 (0.970) | 8 (0.120) | 4/518 | 7.5 | 10.3% | coding (595/1218 nt) | sucB | dihydrolipoyltranssuccinase |
| ? | NC_000913 | 762340 = | 75 (1.120) | coding (819/1218 nt) | sucB | dihydrolipoyltranssuccinase | |||||
| * | ? | NC_000913 | 4448489 = | 61 (0.870) | 4 (0.060) | 4/526 | 7.6 | 5.8% | coding (43/252 nt) | chpS | antitoxin of the ChpBS toxin‑antitoxin system |
| ? | NC_000913 | 4448829 = | 70 (1.030) | coding (138/351 nt) | chpB | toxin of the ChpB‑ChpS toxin‑antitoxin system | |||||
| * | ? | NC_000913 | = 3809446 | 59 (0.840) | 4 (0.060) | 4/528 | 7.6 | 6.4% | coding (907/1278 nt) | waaA | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| ? | NC_000913 | = 3810090 | 60 (0.880) | coding (266/480 nt) | coaD | pantetheine‑phosphate adenylyltransferase | |||||
| * | ? | NC_000913 | = 3220246 | 104 (1.480) | 5 (0.070) | 4/526 | 7.6 | 5.0% | coding (753/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| ? | NC_000913 | = 3220398 | 90 (1.330) | coding (905/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913 | = 3151936 | 66 (0.940) | 4 (0.060) | 4/528 | 7.6 | 5.2% | coding (49/735 nt) | exbB | membrane spanning protein in TonB‑ExbB‑ExbD complex |
| ? | NC_000913 | = 3152126 | 83 (1.220) | intergenic (‑142/‑110) | exbB/metC | membrane spanning protein in TonB‑ExbB‑ExbD complex/cystathionine beta‑lyase, PLP‑dependent | |||||
| * | ? | NC_000913 | = 1731677 | 88 (1.250) | 4 (0.060) | 4/526 | 7.6 | 5.3% | coding (2591/4617 nt) | lhr | putative ATP‑dependent helicase |
| ? | NC_000913 | = 1732485 | 59 (0.870) | coding (3399/4617 nt) | lhr | putative ATP‑dependent helicase | |||||
| * | ? | NC_000913 | 387750 = | 46 (0.650) | 4 (0.060) | 4/528 | 7.6 | 6.4% | coding (780/828 nt) | tauC | taurine ABC transporter permease |
| ? | NC_000913 | 387973 = | 72 (1.060) | coding (179/852 nt) | tauD | taurine dioxygenase, 2‑oxoglutarate‑dependent | |||||
| * | ? | NC_000913 | 3931092 = | 79 (1.120) | 4 (0.060) | 4/534 | 7.7 | 6.0% | coding (2/1497 nt) | ravA | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
| ? | NC_000913 | 3931882 = | 47 (0.680) | coding (567/1869 nt) | kup | potassium transporter | |||||