mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.3% | 56.0 / 33.1 | 44 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 27.3% | 26.2 / 15.9 | 22 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 23.8% | 28.0 / 10.2 | 22 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 74 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 35 (0.460) | 8 (0.110) | 8/456 | 4.8 | 16.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 46 (0.630) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 2317186 | 56 (0.740) | 6 (0.080) | 6/462 | 5.5 | 9.5% | coding (2691/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| ? | NC_000913 | = 2317364 | 60 (0.810) | coding (2513/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN | |||||
| * | ? | NC_000913 | 381525 = | NA (NA) | 8 (0.110) | 6/466 | 5.5 | NA | noncoding (266/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382181 = | NA (NA) | noncoding (922/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 320947 | 90 (1.180) | 7 (0.090) | 6/460 | 5.5 | 7.8% | coding (721/855 nt) | rclR | reactive chlorine species (RCS)‑specific activator of the rcl genes |
| ? | NC_000913 | = 321038 | 79 (1.070) | coding (812/855 nt) | rclR | reactive chlorine species (RCS)‑specific activator of the rcl genes | |||||
| * | ? | NC_000913 | 2562181 = | 44 (0.580) | 5 (0.070) | 5/452 | 5.8 | 7.7% | coding (71/417 nt) | yffO | CPZ‑55 prophage; uncharacterized protein |
| ? | NC_000913 | 2562379 = | 78 (1.070) | coding (269/417 nt) | yffO | CPZ‑55 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 2309320 = | 88 (1.160) | 6 (0.080) | 5/452 | 5.8 | 8.3% | coding (22/651 nt) | alkB | oxidative demethylase of N1‑methyladenine or N3‑methylcytosine DNA lesions |
| ? | NC_000913 | 2309519 = | 49 (0.670) | coding (887/1065 nt) | ada | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase | |||||
| * | ? | NC_000913 | 4624787 = | 98 (1.290) | 6 (0.080) | 5/460 | 5.9 | 6.7% | coding (3/645 nt) | ytjB | SMP_2 family putative membrane‑anchored periplasmic protein |
| ? | NC_000913 | 4624932 = | 71 (0.960) | coding (38/969 nt) | serB | 3‑phosphoserine phosphatase | |||||
| * | ? | NC_000913 | 3953045 = | 93 (1.220) | 6 (0.080) | 5/456 | 5.9 | 6.7% | coding (562/930 nt) | ilvE | branched‑chain amino acid aminotransferase |
| ? | NC_000913 | 3953125 = | 77 (1.050) | coding (642/930 nt) | ilvE | branched‑chain amino acid aminotransferase | |||||
| * | ? | NC_000913 | = 3017039 | 57 (0.750) | 7 (0.100) | 5/458 | 5.9 | 9.7% | coding (980/3099 nt) | ygfK | putative Fe‑S subunit oxidoreductase subunit |
| ? | NC_000913 | = 3017116 | 75 (1.020) | coding (1057/3099 nt) | ygfK | putative Fe‑S subunit oxidoreductase subunit | |||||
| * | ? | NC_000913 | = 4498381 | 3 (0.040) | 13 (0.170) | 5/468 | 6.0 | 81.4% | noncoding (201/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 4498773 | NA (NA) | noncoding (593/1331 nt) | IS2 | repeat region | |||||