mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | [crl] | [crl] | |
| JC JC | 562,624 | IS5 (–) +4 bp | coding (289‑292/984 nt) | sfmH → | FimA homolog, function unknown |
| RA | 1,290,656 | C→T | L139F (CTT→TTT) | rssB → | PcnB‑degradosome interaction factor; response regulator |
| MC JC | 1,299,499 | Δ1,199 bp | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,333,383 | T→A | V779E (GTG→GAG) | topA → | DNA topoisomerase I, omega subunit |
| RA | 1,335,283 | G→T | G54* (GGA→TGA) | ymiA → | uncharacterized protein |
| RA | 1,882,635 | G→A | A242T (GCG→ACG) | dmlA → | D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase |
| MC JC | 1,905,253 | Δ36,755 bp | [yobD]–[znuA] | 41 genes [yobD], mntP, rlmA, cspC, yobF, yebO, mgrB, yobH, kdgR, yebQ, htpX, prc, proQ, msrC, yebS, yebT, rsmF, yebV, yebW, pphA, ryeA, sdsR, yebY, yebZ, yobA, holE, yobB, exoX, ptrB, yebE, yebF, yebG, purT, eda, edd, zwf, yebK, pykA, lpxM, mepM, [znuA] |
|
| MC JC | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| RA | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,698,431 | +CA | coding (120/636 nt) | pgpC ← | phosphatidylglycerophosphatase C, membrane bound |
| RA | 2,860,761 | 2 bp→TT | coding (473‑474/768 nt) | ygbI ← | DeoR family putative transcriptional regulator |
| RA | 3,560,455 | +G | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196202 | 1211577 | 15376 | 36 [34] | [34] 36 | [icd]–[icdC] | [icd],ymfD,ymfE,lit,intE,xisE,ymfI,ymfJ,cohE,croE,ymfL,ymfM,oweE,aaaE,ymfR,beeE,jayE,ymfQ,stfP,tfaP,tfaE,stfE,pinE,mcrA,[icdC] |