mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1411899 = | 89 (1.020) | 4 (0.050) | 4/478 | 8.7 | 5.4% | coding (50/936 nt) | ttcA | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| ? | NC_000913 | = 1434958 | 59 (0.750) | pseudogene (51/51 nt) | ttcC | pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 2066856 | NA (NA) | 5 (0.060) | 4/528 | 9.3 | NA | noncoding (498/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2066860 = | NA (NA) | noncoding (494/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 632050 | 69 (0.830) | 12 (0.140) +CCCTCTCA |
3/490 | 9.5 | 14.5% | intergenic (+51/‑132) | cstA/ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein |
| ? | NC_000913 | 632051 = | 74 (0.850) | intergenic (+52/‑131) | cstA/ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein | |||||
| * | ? | NC_000913 | = 1163212 | 56 (0.660) | 5 (0.060) +GCA |
3/514 | 9.8 | 8.2% | coding (575/642 nt) | lpoB | OM lipoprotein stimulator of MrcB transpeptidase |
| ? | NC_000913 | 1163213 = | 56 (0.640) | coding (576/642 nt) | lpoB | OM lipoprotein stimulator of MrcB transpeptidase | |||||
| * | ? | NC_000913 | = 1651111 | 6 (0.070) | 3 (0.040) | 3/518 | 9.9 | 33.9% | noncoding (269/706 nt) | IS2 | repeat region |
| ? | NC_000913 | = 1651204 | NA (NA) | noncoding (362/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1070259 = | 62 (0.710) | 3 (0.040) | 3/518 | 9.9 | 4.2% | coding (96/495 nt) | rutF | flavin:NADH reductase |
| ? | NC_000913 | 1070307 = | 77 (0.910) | coding (48/495 nt) | rutF | flavin:NADH reductase | |||||
| * | ? | NC_000913 | = 382153 | NA (NA) | 3 (0.040) | 3/518 | 9.9 | NA | noncoding (894/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382246 | NA (NA) | noncoding (987/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 3961411 | 120 (1.380) | 3 (0.030) | 3/528 | 10.0 | 2.5% | coding (735/2022 nt) | rep | DNA helicase and single‑stranded DNA‑dependent ATPase |
| ? | NC_000913 | 3961415 = | 114 (1.320) | coding (739/2022 nt) | rep | DNA helicase and single‑stranded DNA‑dependent ATPase | |||||
| * | ? | NC_000913 | = 3750360 | 130 (1.500) | 3 (0.030) | 3/530 | 10.0 | 2.3% | coding (275/696 nt) | sgbE | L‑ribulose‑5‑phosphate 4‑epimerase |
| ? | NC_000913 | 3750365 = | 128 (1.470) | coding (280/696 nt) | sgbE | L‑ribulose‑5‑phosphate 4‑epimerase | |||||
| * | ? | NC_000913 | = 3559553 | 83 (0.950) | 3 (0.030) | 3/528 | 10.0 | 3.4% | coding (1286/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
| ? | NC_000913 | 3559557 = | 86 (0.990) | coding (1290/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression | |||||