mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 21.6% | 55.7 / 17.5 | 39 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 84 (0.960) | 9 (0.110) | 9/518 | 6.6 | 10.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 70 (0.850) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 89 (1.020) | 5 (0.060) | 5/518 | 8.6 | 6.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 71 (0.860) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 2015807 | 80 (0.930) | 7 (0.080) +TGAT |
4/530 | 9.3 | 8.1% | coding (928/996 nt) | fliG | flagellar motor switching and energizing component |
| ? | NC_000913 | 2015808 = | 80 (0.910) | coding (929/996 nt) | fliG | flagellar motor switching and energizing component | |||||
| * | ? | NC_000913 | = 471476 | 79 (0.900) | 4 (0.050) | 4/548 | 9.6 | 4.8% | coding (841/1782 nt) | mdlB | putative multidrug ABC transporter ATPase |
| ? | NC_000913 | 471480 = | 79 (0.900) | coding (845/1782 nt) | mdlB | putative multidrug ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 3073238 | 129 (1.470) | 3 (0.030) | 3/542 | 10.2 | 2.3% | coding (454/1020 nt) | epd | D‑erythrose 4‑phosphate dehydrogenase |
| ? | NC_000913 | = 3073241 | 127 (1.470) | coding (451/1020 nt) | epd | D‑erythrose 4‑phosphate dehydrogenase | |||||
| * | ? | NC_000913 | = 2643424 | 102 (1.160) | 3 (0.030) | 3/544 | 10.2 | 2.9% | coding (860/1155 nt) | rlmN | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 2643428 = | 101 (1.160) | coding (856/1155 nt) | rlmN | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 1263250 = | 78 (0.890) | 3 (0.030) | 3/540 | 10.2 | 3.8% | coding (251/624 nt) | lolB | lipoprotein localization factor |
| ? | NC_000913 | = 1263246 | 74 (0.860) | coding (255/624 nt) | lolB | lipoprotein localization factor | |||||
| * | ? | NC_000913 | = 3942220 | NA (NA) | 3 (0.030) | 3/548 | 10.3 | NA | noncoding (413/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 3942225 = | NA (NA) | noncoding (418/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 1395228 | 95 (1.080) | 3 (0.030) | 3/550 | 10.3 | 3.0% | coding (695/1032 nt) | ynaI | mechanosensitive channel protein, very small conductance |
| ? | NC_000913 | 1395232 = | 97 (1.110) | coding (691/1032 nt) | ynaI | mechanosensitive channel protein, very small conductance | |||||
| * | ? | NC_000913 | 996104 = | 97 (1.110) | 3 (0.030) | 3/548 | 10.3 | 3.1% | coding (841/960 nt) | ssuA | aliphatic sulfonate ABC transporter periplasmic binding protein |
| ? | NC_000913 | 996167 = | 91 (1.040) | coding (778/960 nt) | ssuA | aliphatic sulfonate ABC transporter periplasmic binding protein | |||||