mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 526,796 | 0 | C | G | 31.0% | 179.1 / 89.3 | 89 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 526,792 | 0 | A | C | 28.7% | 137.1 / 74.4 | 90 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 526,800 | 0 | A | G | 26.7% | 161.2 / 59.1 | 88 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1467910 = | NA (NA) | 5 (0.070) | 4/510 | 7.8 | NA | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 1469242 | NA (NA) | pseudogene (2/53 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 | |||||
| * | ? | NC_000913 | = 4542690 | 29 (0.400) | 3 (0.040) | 3/492 | 8.2 | 6.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 64 (0.920) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1634997 | NA (NA) | 3 (0.040) | 3/492 | 8.2 | 2.9% | coding (851/963 nt) | stfQ | Qin prophage; putative side tail fibre assembly protein |
| ? | NC_000913 | = 1635134 | 103 (1.430) | coding (714/963 nt) | stfQ | Qin prophage; putative side tail fibre assembly protein | |||||
| * | ? | NC_000913 | = 381689 | NA (NA) | 3 (0.040) | 3/492 | 8.2 | NA | noncoding (430/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381743 | NA (NA) | noncoding (484/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 2355830 | 85 (1.180) | 3 (0.040) | 3/496 | 8.3 | 3.6% | coding (310/1191 nt) | glpC | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster |
| ? | NC_000913 | = 2355861 | 76 (1.090) | coding (341/1191 nt) | glpC | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster | |||||
| * | ? | NC_000913 | 9791 = | 66 (0.920) | 3 (0.040) | 3/500 | 8.3 | 4.3% | coding (486/588 nt) | mog | molybdochelatase incorporating molybdenum into molybdopterin |
| ? | NC_000913 | 10102 = | 68 (0.970) | coding (393/567 nt) | satP | succinate‑acetate transporter | |||||
| * | ? | NC_000913 | 381262 = | NA (NA) | 7 (0.100) | 3/506 | 8.4 | NA | noncoding (3/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382594 | NA (NA) | pseudogene (279/282 nt) | yaiX | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase | |||||