Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | BX571857 | 2,534,899 | A→G | 9.2% | G81G (GGT→GGC) | SAS2368 ← | putative exported protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | BX571857 | 2,534,899 | 0 | A | G | 9.2% | 341.6 / 18.3 | 87 | G81G (GGT→GGC) | SAS2368 | putative exported protein |
Reads supporting (aligned to +/- strand): ref base A (46/33); new base G (4/4); total (50/37) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.18e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TAATCTTTCACTTTTAATTAAATCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAGTGTTATGCTTGAGATAA > BX571857/2534803‑2534995 | tAATCTTTCACTTTTAATTAAATCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTaa > 1:604725/1‑97 (MQ=255) tCTTTCACTTTTAATTAAATCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCt > 2:502300/1‑97 (MQ=255) cTTTCACTTTTAATTAAATCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCtt < 2:712534/97‑1 (MQ=255) ttCACTTTTAATTAAATCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCa < 2:997896/97‑1 (MQ=255) ttCACTTTTAATTAAATCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCa < 2:681796/97‑1 (MQ=255) cACTTTTAATTAAATCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAAt < 1:755454/97‑1 (MQ=255) cACTTTTAATTAAATCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAAt < 2:1039021/97‑1 (MQ=255) aCTTTTAATTAAATCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATc > 1:165002/1‑97 (MQ=255) cTTTTAATTAAATCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATca > 2:1176451/1‑97 (MQ=255) ttttAATTAAATCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATcac < 1:44326/97‑1 (MQ=255) tttAATTAAATCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATcaca > 1:824974/1‑97 (MQ=255) aattaaATCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCa > 1:587524/1‑97 (MQ=255) taaATCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACtt > 1:1387824/1‑97 (MQ=255) aaTCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTcc < 2:975384/97‑1 (MQ=255) aaTCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTcc < 2:494243/97‑1 (MQ=255) aTCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTccc < 1:152733/97‑1 (MQ=255) cACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCAt > 2:1276177/1‑97 (MQ=255) cTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAgg > 1:977598/1‑97 (MQ=255) cTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAgg < 1:293253/97‑1 (MQ=255) cTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAgg < 1:292799/97‑1 (MQ=255) cTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAgg < 1:961365/97‑1 (MQ=255) tACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGa > 2:619781/1‑97 (MQ=255) tACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGa < 1:491849/97‑1 (MQ=255) aCAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGAc < 1:282895/97‑1 (MQ=255) cAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACt > 2:10254/1‑97 (MQ=255) aaTTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTg < 2:315138/97‑1 (MQ=255) ttGATATTTATTTTCAGGTGTTACATAGGCAACAAAATTATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGtt < 2:182889/97‑1 (MQ=17) ttGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGtt > 1:1406615/1‑97 (MQ=255) ttGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGtt > 1:1001198/1‑97 (MQ=255) tGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGttt > 1:928262/1‑97 (MQ=255) aGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATTACAGCACTTCCCATAGGACTTGTTTCCaa > 2:194175/1‑97 (MQ=255) aGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCaa > 2:556817/1‑97 (MQ=255) ttATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAAtt > 1:236248/1‑97 (MQ=255) tATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCGCACGACTGCCCGTCGGGCTGGTTTCCagtgt > 2:1222639/1‑93 (MQ=21) tATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAAttt > 1:231031/1‑97 (MQ=255) tATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAAttt > 2:1352774/1‑97 (MQ=255) aTTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAAtttt > 1:186228/1‑97 (MQ=255) ttttCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTtg < 2:1190992/97‑1 (MQ=255) ttCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTtgtg > 2:316378/1‑97 (MQ=255) gTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATg < 2:250947/97‑1 (MQ=255) gTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATg < 1:319889/97‑1 (MQ=255) tGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGc > 1:432627/1‑97 (MQ=255) aTACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGcac > 2:324890/1‑97 (MQ=255) tACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGcaca > 2:1044995/1‑97 (MQ=255) aCATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAg > 1:1275239/1‑97 (MQ=255) aCATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAg > 1:1275098/1‑97 (MQ=255) aTAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGAt < 2:748871/97‑1 (MQ=255) tAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGAtt > 1:769701/1‑97 (MQ=255) aGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGAttt > 1:668968/1‑97 (MQ=255) ggCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTa > 1:240172/1‑97 (MQ=255) caacaaAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAAt < 2:593081/97‑1 (MQ=255) agtaaaaTTATCTTTTTTGTTTTCATTGATGTAGCCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATc > 2:948959/4‑97 (MQ=14) acaaAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCg > 2:1072959/1‑97 (MQ=255) acaaAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCg > 1:329856/1‑97 (MQ=255) taaaaTTATCTTTTTTGTTTTCATTGATGTAGCCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGTTTTAATCgt > 1:677906/2‑97 (MQ=11) caaAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCgt < 1:644125/97‑1 (MQ=255) aaaaTTATCTTTTTTGTTTTCATTTATGTAGCCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCgtg < 1:15915/97‑1 (MQ=255) aaTCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGtt > 2:185761/1‑97 (MQ=255) attatcTTTTTTGTTTTCATTTATGTAGCCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTc < 2:764419/94‑1 (MQ=255) atcatcTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTc > 2:1105547/1‑97 (MQ=255) tcatcTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCg < 2:667449/97‑1 (MQ=255) tcatcTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCg > 2:458818/1‑97 (MQ=255) catcTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCgg < 1:892368/97‑1 (MQ=255) atcTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATCTTGTGAAATGCACAGATTTAATCGTGTTCGGt > 2:61507/1‑97 (MQ=255) tcTTTTTTGTTTTCATTGATGTAGCCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGtt > 2:1000487/1‑97 (MQ=255) ttttttGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCt > 1:369972/1‑97 (MQ=255) tttttGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCtt < 1:803574/97‑1 (MQ=255) ttttGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCttt < 1:1171526/97‑1 (MQ=255) tGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAgt < 1:873187/97‑1 (MQ=255) tGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAgt > 2:1338449/1‑97 (MQ=255) gTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAgtg > 1:1148021/1‑97 (MQ=255) ttttCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAgtgt < 1:1357180/97‑1 (MQ=255) ttttCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAgtgt < 2:1396237/97‑1 (MQ=255) ttttCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAgtgt < 2:581880/97‑1 (MQ=255) tttCATTTATGTAGCCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAGTGtt < 1:1000487/97‑1 (MQ=255) ttCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAGTGTTa > 1:375309/1‑97 (MQ=255) ttCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGCTCGGTTCTTTAGTGTTa > 1:1402144/1‑97 (MQ=255) cATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAGTGTTATg < 2:69617/97‑1 (MQ=255) aTTGATGTAGCCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAGTGTTATGc < 2:677906/97‑1 (MQ=255) ttATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAGTGTTATGCtt > 1:242228/1‑97 (MQ=255) ttATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAGTGTTATGCtt > 1:1068262/1‑97 (MQ=255) tATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAGTGTTATGCTTg > 2:1008144/1‑97 (MQ=255) tATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAGTGTTATGCTTg > 1:1000311/1‑97 (MQ=255) gaTGTAGCCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAAGTTTGTGAAATGCACAGATTTGATCGTGTTCGGCTCTTTGGTGTTATGCTTg > 2:876359/2‑97 (MQ=11) aTGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAGTGTTATGCTTga < 2:1143894/97‑1 (MQ=255) gTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAGTGTTATGCTTgaga > 1:1119946/1‑97 (MQ=255) gTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAGTGTTATGCTTgaga < 1:403328/97‑1 (MQ=255) tAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTACTCGTGTTCGGTTCTTTAGTGTTAAGCTCgagac > 1:905078/1‑96 (MQ=25) aCCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAGTGTTATGCTTGAGATaa > 2:1364852/1‑97 (MQ=255) | TAATCTTTCACTTTTAATTAAATCACCTACAAATTGAAAGTTATTTTCAGGTGATACATAGGCAACAAAATCATCTTTTTTGTTTTCATTTATGTAACCTTCAATCACAGCACTTCCCATAGGACTTGTTTCCAATTTTGTGAAATGCACAGATTTAATCGTGTTCGGTTCTTTAGTGTTATGCTTGAGATAA > BX571857/2534803‑2534995 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |