| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | BX571857 | 1,332,856 | 30 bp→TCGGTGGTCGCCGTATCATTAAAAAAAAAA | 14.0% | coding (185‑214/1239 nt) | SAS1239 → | conserved hypothetical protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 1332855 | 166 (0.750) | 18 (0.130) +TCGGTGGTCGCCGTATCATTAAAAAAAAAA |
16/112 | NT | 14.0% | coding (184/1239 nt) | SAS1239 | conserved hypothetical protein |
| ? | BX571857 | 1332886 = | 176 (0.800) | coding (215/1239 nt) | SAS1239 | conserved hypothetical protein | |||||
GGAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/1332776‑1332855‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACGAATGATGA > BX571857/1332886‑1332943 |||||||||||||||||||||||||||||| GGAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCGGTAgc > 2:50556/1‑95GGAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATC > 2:3095731/1‑97GGAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGAAGGTCGCCGTGTC > 2:3109779/1‑97 TATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAA > 2:1315428/1‑97 TCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAA > 2:300212/1‑97 CATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTAGCATTAAAAAAAA > 2:697496/1‑97 CATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCGCGGAGGTCGTCGTGGCATTAGAAAAAA > 2:1072656/1‑97 TATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCGCGGTGGTCGCCGTAGCATTGAAAAAAAAAAAGA > 2:1306234/1‑97 TGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAAAAATTCAAGaag > 2:2043568/1‑94 ACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAAAAATACAAGAATTAATT > 2:2867517/1‑97 TTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCGCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGA > 2:1041681/1‑97 TGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAG > 2:3149966/1‑97 GTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTAGCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGATCAAA > 2:2510051/1‑97 TTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTTGCGGTGGTATTGGAAAAAAGGAAGAAATTCAAGCATTTATTGAGTTCAAAG > 2:2730551/1‑97 GGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTAGCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGAT > 2:868543/1‑97 GTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCAGTTATTGAGTGCAAAGATAT > 2:1267524/1‑97 GTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAACTCAAGCAAATATTGAGTTCAAAGATAa > 2:1267879/1‑96 TCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCAATAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATT > 2:211138/1‑97 ACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCAGTTATTGAGGTCAAAGATATAGATGTAG > 2:1927729/1‑97 ACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAGAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCAC > 2:2420160/1‑97 ACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCAC > 2:3185965/1‑97 GAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACGAA > 2:1119724/1‑97 AGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACGAAT > 2:1397134/1‑97 GATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACGAAag > 2:2731438/1‑95 CGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGCGCAAAGATATTGATGTAGTCATCACGAATGATG > 2:193183/1‑97 GTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGAATGTATTGGGTTCAAAGATATTGATGTAGACATAACGAATGATGA > 2:551606/1‑97 |||||||||||||||||||||||||||||| GGAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/1332776‑1332855‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACGAATGATGA > BX571857/1332886‑1332943 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |