| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 596598 | 199 (1.120) | 11 (0.070) | 6/180 | 15.5 | 6.1% | coding (2193/2874 nt) | SAS0519 | putative surface anchored protein |
| ? | BX571857 | = 2700094 | 150 (0.900) | coding (2374/2718 nt) | SAS2516 | fibrinogen and keratin‑10 binding surface anchored protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGTGACTCAGATTCAGACAGCGACTCAGACTCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/596497‑596598‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagatAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGAC < BX571857/2700094‑2699999 GTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGTGACTCAGATTCAGACAGCGACTCAGACT > 2:2676251/1‑97GTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGTGACTCAGATTCAGACAGCGACTCAGACT > 2:2494251/1‑97GTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGTGACTCAGATTCAGACAGCGACTCAGACT < 1:253396/97‑1GTAACAATTACGGATCATGATGATTTCACACNTGATAATGGCTACTACGAAGAAGAAACATCAGATAGTGACTCAGATTCAGACAGCGACTCAGACT > 1:1686434/1‑97 TAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGTGACTCAGATTCAGACAGCGACTCAGACTC > 2:1296121/1‑97 AACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGTGACTCAGATTCAGACAGCGACTCAGACTCA > 2:991308/1‑97 ACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGTGACTCAGATTCAGACAGCGACTCAGACTCAG < 2:292658/97‑1 ACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGTGACTCAGATTCAGACAGCGACTCAGACTCAG < 1:651130/97‑1 ACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGTGACTCAGATTCAGACAGCGACTCAGACTCAG > 1:706351/1‑97 ACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGTGACTCAGATTCAGACAGCGACTCAGACTCAG < 1:1150013/97‑1 AATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGTGACTCAGATTCAGACAGCGACTCAGACTCAGAT > 1:1942346/1‑97 ACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGTGACTCAGATTCAGACAGCGACTCAGACTCAGATAcag > 2:1761117/1‑94 TAATGGCTACTACGAAGAAGAAACATCAGATAGTGACTCAGATTCAGACAGCGACTCAGACTCAGACAGTGATTCAGACTCAGACAGCGACTCAGAt > 1:1267532/1‑96 gaATCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAG < 2:335530/95‑1 gatTCAGACTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAG < 1:1366349/94‑1 gagTCAGACTCAGACAGCGATTCAGATTCAGATAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAG < 2:2387811/94‑1 cccCAGATGCAGACAGCGACTCAGACTCAGATCGCGATTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGA < 2:1671124/94‑1 cCAGACACAGACCCAGATCCAGATAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACA < 2:2590226/96‑1 TCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGACAGCGACACAGATTCAGATAGCGACTCAGACTCAGACAGCGACACAGACTCAGACA > 2:2101563/1‑97 CAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAG < 1:1613463/97‑1 CAGCGACTCAGATTCAGATAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGAC < 2:2016806/97‑1 TCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACT > 1:1672546/1‑97 TCAGATAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATA > 1:1171596/1‑97 TCAGATAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATA > 1:196331/1‑97 AGATAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGC < 1:1049780/97‑1 GATGGCGACTCCGCCTCAGCCAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCG < 2:2628680/97‑1 GATCGCGACTCAGACTCAGACAGCGACCCAGCATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCG < 2:2628693/97‑1 GATAGCGACTCAGACTCAGGCAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCG < 1:1104072/97‑1 GATAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCG < 1:578052/97‑1 ATAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGA < 2:2568642/97‑1 ATAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGA < 2:2550706/97‑1 ATAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGA > 2:1764724/1‑97 TAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGAC > 1:1814620/1‑97 TAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGAC > 1:248125/1‑97 TAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGAC < 1:1088246/97‑1 TAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGAC > 1:1670395/1‑97 TAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGAC > 2:569430/1‑97 TAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGAC > 2:1724396/1‑97 GTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGTGACTCAGATTCAGACAGCGACTCAGACTCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/596497‑596598‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagatAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGAC < BX571857/2700094‑2699999 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |