New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BX571857	596989 =	158 (0.890)	8 (0.040)	5/192	16.7	4.7%	coding (2584/2874 nt)	SAS0519	putative surface anchored protein
	?	BX571857	= 601554	166 (0.930)					coding (3909/4098 nt)	SAS0520	putative surface anchored protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATCTGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAATCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  BX571857/597079‑596989 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCTGAATCTGAGTCGCTATCTGAGTCTGAATCGC  <  BX571857/601554‑601520                                                                                                                                TATCTGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAATCGCTGTCcgg                               >  2:28665/1‑94   TCTGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAATCGCTGTCCGAAT                             >  2:1298936/1‑97   TCTGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTATCTGAGTCTGAGTCGCTGTCTGAAT                             >  2:283199/1‑97     TGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTATCTGAATCTGAATCGCGGTCCGAATCg                           >  2:916815/1‑96       AATCGGCGTCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTATCTGAGTCTGAATCGCTGTCTGAATCTGA                         <  2:1494586/97‑1         TCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAATCGCTGTCTGAGTCTGAGT                       >  2:2535962/1‑97                        GAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAATCGCTATCTGAGTCTG        >  1:1887639/1‑97                              GAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCGCTGTCTGAGTCGC  >  2:810477/1‑97                                                                                                                                TATCTGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAATCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  BX571857/597079‑596989 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCTGAATCTGAGTCGCTATCTGAGTCTGAATCGC  <  BX571857/601554‑601520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.