| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 601319 | 184 (1.030) | 9 (0.060) +TTCAGACAGCGAT |
3/166 | 17.0 | 5.7% | coding (3674/4098 nt) | SAS0520 | putative surface anchored protein |
| ? | BX571857 | = 2700088 | 161 (0.900) | coding (2380/2718 nt) | SAS2516 | fibrinogen and keratin‑10 binding surface anchored protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGTGATTCAGATTCAGATAGCGACTCAGACTCAGATAGCGATTCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/601230‑601319‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCGG < BX571857/2700088‑2699995 ||||||||||||| TTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGTGATTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGAC < 1:1813891/97‑1 AGATTCAGACAGCGATTCAGACTCAGACAGTGATTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCA < 1:2169406/97‑1 ggagTCAGATTCAGACAGAGACTCAGACTCAGATAGCGATTCAGACTCAGACAGCGATTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCA < 2:1548675/93‑1 AGATTCAGACAGCGACTCCGACTCAGATTGCGATTCAGACTCAGATAGCGATTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCA < 2:1288054/97‑1 TTCAGACAGCGACTCAGGTTCAGACAGCGATTCGGATTCAGACAGCGATTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGAC < 1:491567/97‑1 gccAGCGACTCCGGTTCAGAGAGCTATTCGGATTCAGACAGCGATTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCG < 2:1042936/94‑1 gagTCAGACTCAGACAGCGATTCAGATTCAGATAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAG < 2:2387811/94‑1 AGACTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCA < 1:2308642/97‑1 AGCGATTCAGACTCAGACAGCGATTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCA > 1:2540523/1‑69 AGCGATTCAGACTCAGACAGCGATTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCA < 2:2540523/69‑1 CAGACAGCGATTCAGACTCAGACAGCGACTCAGGATCAGATAGCGATTCAGACTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAG > 1:1596634/1‑97 GACAGCGAGTCAGACTCAGACAGCGACTCAGACTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCG < 2:1906173/97‑1 GATTCAGACTCAGACAGCGACTCAGACTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCag > 2:578052/1‑95 ||||||||||||| TTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGTGATTCAGATTCAGATAGCGACTCAGACTCAGATAGCGATTCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/601230‑601319‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCGG < BX571857/2700088‑2699995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |