| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | BX571857 | 2,220,583 | 30 bp→TTTTTTTTTTAATGATACGGCGACCACCGA | 12.9% | pseudogene (4082‑4111/5385 nt) | fmtB ← | putative surface anchored protein (pseudogene) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 2220582 | 234 (1.160) | 23 (0.170) +TTTTTTTTTTAATGATACGGCGACCACCGA |
20/114 | NT | 12.9% | pseudogene (4112/5385 nt) | fmtB | putative surface anchored protein (pseudogene) |
| ? | BX571857 | 2220613 = | 243 (1.200) | pseudogene (4081/5385 nt) | fmtB | putative surface anchored protein (pseudogene) | |||||
CTTGATCAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/2220526‑2220582‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTAACTGCTGTTGCTA > BX571857/2220613‑2220678 |||||||||||||||||||||||||||||| CTTGATCAACATCATTTTTAGCATTTGATTTACCCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTCTTGATACGGCGACCCCCGAGATCTACACCA < 2:230459/98‑1 TGATCAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATT < 2:1870106/98‑1 TCAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTTCGTGCTTTTTTTTGTTTTCATGATACGGCGACCACCGAGATCTACACCATTATC < 2:3228784/98‑1 TCAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATC < 2:352666/98‑1 TCAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATC < 2:2433027/98‑1 CAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCA < 2:388237/98‑1 ACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTCTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATC < 2:2722772/98‑1 gTCATTTTTATCATTTGATTTAACCGATGTTTCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAG < 2:1211901/97‑1 TTTTTATCTTTTGATTTACCCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGC < 2:3105863/98‑1 TTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTGTTTTCATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAG < 2:1361849/98‑1 TTAGCTTTTGATGTAACCGATGTTGCTGGTTGCGTTCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGC < 2:1553798/98‑1 CATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTTGTTTTTTTTTATTGCCAGCGCCTCCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTA < 2:2789583/98‑1 TTTACCCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTATTGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTAT < 2:1493995/98‑1 TTAACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAGTTCTACGGCGTTTCCCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATT < 2:2402059/98‑1 AACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTT < 2:2422132/98‑1 AACCGATGTTGCTGGTTGCGTGCTTTTTTTTTTATTCTTGCCACGGCCTCCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTT < 2:2455394/98‑1 CCGATGTTGCTGGTTGCTTGCTTTTTTTTTTTTTCTTGATACGGCCACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTC < 2:61877/98‑1 TGTTGCGGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGT < 2:841605/98‑1 CTGGTTGCGTGCTTTTTTTTTTTTTCTTGCCACGGCCTCCCCCCTGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTA < 2:99991/98‑1 gGGTTGCGTGCTTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTAA < 2:563390/97‑1 GGTTGCGTGCTTTTTTTTGTTTTATTGCTACCGCGACCCCCGTGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTAAC < 2:2903552/98‑1 CGTGCTTTGTTTTTGTTTCATGATAGGGCCACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTAACTGCTG < 2:992329/98‑1 ttCTTTTTTTTTTTTTCATGCTACGGCGTCCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTAACTGCTGTT < 2:1152018/96‑1 TGCTTTTTTTTTTTTTCATGACACGGCGTCCACCGTGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTAACTGCTGTT < 2:1151640/98‑1 TTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTAACTGCTGTTGCTA < 2:1226107/98‑1 |||||||||||||||||||||||||||||| CTTGATCAACATCATTTTTAGCATTTGATTTAACCGATGTTGCTGGTTGCGTGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/2220526‑2220582‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATCTACACCATTATCATCAGTTGCAGCTGTAATATTATTTTTCGCGTCTGTAACTGCTGTTGCTA > BX571857/2220613‑2220678 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |