| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BX571857 | 1,252,438 | T→C | 100% | intergenic (+358/‑77) | SAS1171 → / → SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BX571857 | 1,252,438 | 0 | T | C | 100.0% | 56.2 / NA | 14 | intergenic (+358/‑77) | SAS1171/SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (6/8); total (6/8) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CCTATTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTATAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTAAAA > BX571857/1252351‑1252527 | ccTATTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTca < 1:281196/97‑1 (MQ=255) cTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTaa < 2:238601/97‑1 (MQ=255) aTTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAatat < 1:360893/97‑1 (MQ=255) aTTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAatat < 2:79568/97‑1 (MQ=255) gTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTAttt < 1:277758/97‑1 (MQ=255) cacaTAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGt > 2:79104/1‑97 (MQ=255) tAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACGAACATTCACACACCTGTTAATATTATTTCTTGTAGaa < 2:266272/97‑1 (MQ=255) ttGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCCGTTAATATTATTTCTTGTAGAAAATAAAAAt > 1:203808/1‑97 (MQ=255) aaaaaGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACa > 1:365005/1‑97 (MQ=255) taatTTTCCTGGTAAAGAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGga < 1:302315/97‑1 (MQ=255) aGAAAAAACTCTTTACAAACATACACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGc < 2:355210/97‑1 (MQ=255) gAAAAAACTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCa > 1:225633/1‑97 (MQ=255) aaaaaCTCTTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGt > 1:100753/1‑97 (MQ=255) ctctTTACAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCCGTTaaaa > 2:149330/1‑97 (MQ=255) | CCTATTAACAGTCTAATTTAGTAATCACATAGTTATTATTGTAAGAAAAAGGTTCAATAATTTTCCTGGTAAAGAAAAAACTCTTTATAAACATTCACACACCTGTTAATATTATTTCTTGTAGAAAATAAAAATTAAAACATGACTTAAAGGAGATTTTATAAATGGCAGTTAAAA > BX571857/1252351‑1252527 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |