| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | BX571857 | 1,332,856 | 30 bp→TCGGTGGTCGCCGTATCATTAAAAAAAAAA | 18.8% | coding (185‑214/1239 nt) | SAS1239 → | conserved hypothetical protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 1332855 | 143 (0.650) | 23 (0.160) +TCGGTGGTCGCCGTATCATTAAAAAAAAAA |
19/112 | NT | 18.8% | coding (184/1239 nt) | SAS1239 | conserved hypothetical protein |
| ? | BX571857 | 1332886 = | 165 (0.750) | coding (215/1239 nt) | SAS1239 | conserved hypothetical protein | |||||
TTTGAGTCTACAATGGAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/1332762‑1332855‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACGAATGATG > BX571857/1332886‑1332942 |||||||||||||||||||||||||||||| TTTGAGTCTACAATGGAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCG > 2:3493351/1‑97 GGAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATC > 2:2015264/1‑97 GAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGTCGTGTCA > 2:1822030/1‑97 GAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCA > 2:597212/1‑97 GGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATT > 2:3571233/1‑97 ATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGAGGTCGTCGTATCATTAAAAAA > 2:186270/1‑97 CATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTAGCATAAAAAAAAA > 2:2167018/1‑97 ATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCAAAAAAAAAAAA > 2:1846345/1‑97 TCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAA > 2:1997546/1‑97 AGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTGGCAATGAAAAAAAGGAAGAAGTT > 2:1194366/1‑97 TTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTAAAGCA > 2:2841835/1‑97 TGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCAT > 2:2679234/1‑97 TTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCGCGGTGGTCGCGGTGGCATTAGAAAAAAAGAAGAAATTCAAGCATTTATTGA > 2:3064589/1‑97 GAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATACAAGCATCTAGTGAGg > 2:196061/1‑96 GTTGGGTCAAATTACTCAAAACACAGATCGTGTAGATCTCGGTGGTTGCCGTAGCATTGAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTAAAA > 2:3324649/1‑97 TTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAGAAGAAATTCAAGCATGTATTGAGTTCAAAG > 2:1980966/1‑97 TTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCGCGGTGGTCGTCGTATCAATGAAAAAAAAGAAGAAATTCAAGCATTTATTGAGTTCAAAG > 2:2459471/1‑97 GTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATGTATTGAGTGCAAAGATAT > 2:2814489/1‑97 CAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAACAAATTCAAGCAGTTATTGAGTCCAACGACATcc > 2:598037/1‑95 TTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGT > 2:1580970/1‑97 CTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCAATTATTGAGGACCAAGATATAGATATAGT > 2:1222377/1‑97 TCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTC > 2:1622828/1‑97 CAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCA > 2:2644558/1‑97 CAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTAGCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGCTCAACGATATTGATGTAGTCA > 2:2457772/1‑97 CAAAACAGAGATCGTGTAGATCGCGGTGGTCGCGGTAGCAATAAAAAAAAAGAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCA > 2:2367795/1‑97 ACAGAGATCGTGTAGATCGCGGTGGTCGCCGTGGCATTGAAAAAAAGGAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCAC > 2:1660199/1‑97 CAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACG > 2:2636893/1‑97 AGAGATCGTGTAGATCTCGGTGGTCGCCGTAGCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACGA > 2:1893199/1‑97 GATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGCTCAAAGATATTGATGTAGTCATAACGAATG > 2:3442192/1‑97 GATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAACAAATTCAAGCATTTATTGGGTTCAAAGATATTGATGTAATCATCACGAATG > 2:2988983/1‑97 CGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAGTTCAAGCACTTATTGAGTGCATAGATAATGAAGAAGGCATCACGAATGATG > 2:783299/1‑97 |||||||||||||||||||||||||||||| TTTGAGTCTACAATGGAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/1332762‑1332855‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACGAATGATG > BX571857/1332886‑1332942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |